General information for g6423.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as L-dopachrome tautomerase yellow-f2.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t19 | isoform | g6423.t19 | 16906729 | 16909754 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon4 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS4 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon5 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS5 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon6 | 16908824 | 16908841 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS6 | 16908824 | 16908841 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon7 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS7 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon8 | 16909335 | 16909496 |
| chr_2 | g6423 | g6423.t19 | cds | g6423.t19.CDS8 | 16909335 | 16909478 |
| chr_2 | g6423 | g6423.t19 | exon | g6423.t19.exon9 | 16909561 | 16909754 |
| chr_2 | g6423 | g6423.t19 | TTS | g6423.t19 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t19 | TSS | g6423.t19 | NA | NA |
Sequences
>g6423.t19 Gene=g6423 Length=1337
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGATACCGGTGTATTGGAATATCCAAACAATCAAATAGTTGTCCAAAGACCATCA
ATTTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACG
ATTGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAAT
ACATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAA
GCAAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTGATTTT
AATGTCGATGGATTGCAATTCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAG
AAGAAGCCAAATGGTTTTAGAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTT
ACTGTTTCAACTGAAGTGTTGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGT
GATTTCAAATTTATCGGTCATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGAT
TTGAACACAAATGTGATGTTTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAAT
ATTAAAAGAGATTTGAAACGTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTT
ATCTATCCTGTGGATTTAAATATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGT
TTACCTCGTTTCATTTATGACCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGA
GAAAATGTCGGTGATGCTCTCTTAGATACAACCTGCTTAACATAAATAATTATCCTCGGC
TGTTGGTGCACTATGGTGAAGTAAAATTGCAACAATTGCGAAAGAGAGTGAGATAGAGTA
GAAAAGTTTCCTCTTATACAAGTGAATTATTTTAAAATTGTTATTAAAATTCTACTGGCG
CACTTTAATAAAACAAATTAAACAATAAAACTCCGACAGACGACTTAAAATTGCTTTCGC
TATTGCAATAAAATTTC
>g6423.t19 Gene=g6423 Length=374
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVDTGVLEYPNNQIVVQRPS
IWAIDLKTDQPIGRFEIPDTIVPNGRGLAAITIDDDDCLNTFAYLPDWMNNALLVFSASQ
AKMWRFNHNFFFFNPFEGDFNVDGLQFQWNDGIFSIALSKKKPNGFRTAFFHPLGSHSEF
TVSTEVLRNEALASRRTHGGDFKFIGHRGPHSQSGPHALDLNTNVMFFAEMQNNAVSCWN
IKRDLKRANMDIVEQNNATLIYPVDLNIDNENTLWVLSNRLPRFIYDRYDTNAYNFNIWR
ENVGDALLDTTCLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6423.t19 | Gene3D | G3DSA:2.120.10.30 | TolB | 2 | 374 | 0e+00 |
| 2 | g6423.t19 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 12 | 372 | 0e+00 |
| 3 | g6423.t19 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 12 | 372 | 0e+00 |
| 1 | g6423.t19 | Pfam | PF03022 | Major royal jelly protein | 86 | 372 | 0e+00 |
| 4 | g6423.t19 | SUPERFAMILY | SSF101898 | NHL repeat | 83 | 340 | 1e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K22203 (dopachrome tautomerase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed