General information for g6423.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t22 | isoform | g6423.t22 | 16906729 | 16909754 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t22 | cds | g6423.t22.CDS1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t22 | cds | g6423.t22.CDS2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon3 | 16908257 | 16908347 |
| chr_2 | g6423 | g6423.t22 | cds | g6423.t22.CDS3 | 16908257 | 16908347 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon4 | 16908498 | 16908772 |
| chr_2 | g6423 | g6423.t22 | cds | g6423.t22.CDS4 | 16908498 | 16908772 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon5 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t22 | cds | g6423.t22.CDS5 | 16908911 | 16909042 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon6 | 16909335 | 16909496 |
| chr_2 | g6423 | g6423.t22 | exon | g6423.t22.exon7 | 16909561 | 16909754 |
| chr_2 | g6423 | g6423.t22 | TTS | g6423.t22 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t22 | TSS | g6423.t22 | NA | NA |
Sequences
>g6423.t22 Gene=g6423 Length=1318
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGGTATGCAAAACAATCAAATAGTTGTCCAAAGACCATCAATTTGGGCTATTGAT
TTGAAAACTGATCAGCCAATAGGTCGATTTGAAATTCCTGACACGATTGTGCCAAATGGT
CGAGGTCTCGCAGCAATCACAATTGACGATGATGATTGTTTAAATACATTTGCTTATTTA
CCTGATTGGATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAAGCAAAAATGTGGCGC
TTCAATCACAACTTTTTCTTCTTTAATCCGTTCGAAGGTATTATCAATTTTGATTGCAAT
TCCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGAAGCCAAATGGTTTTA
GAACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTGTTTCAACTGAAGTGT
TGAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATTTCAAATTTATCGGTC
ATCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGAACACAAATGTGATGT
TTTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTAAAAGAGATTTGAAAC
GTGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCTATCCTGTGGATTTAA
ATATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGTTTACCTCGTTTCATTTATG
ACCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGAGAAAATGTCGGTGATGCTC
TCTTAGATACAACCTGCTTAACATAAATAATTATCCTCGGCTGTTGGTGCACTATGGTGA
AGTAAAATTGCAACAATTGCGAAAGAGAGTGAGATAGAGTAGAAAAGTTTCCTCTTATAC
AAGTGAATTATTTTAAAATTGTTATTAAAATTCTACTGGCGCACTTTAATAAAACAAATT
AAACAATAAAACTCCGACAGACGACTTAAAATTGCTTTCGCTATTGCAATAAAATTTC
>g6423.t22 Gene=g6423 Length=240
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVGMQNNQIVVQRPSIWAID
LKTDQPIGRFEIPDTIVPNGRGLAAITIDDDDCLNTFAYLPDWMNNALLVFSASQAKMWR
FNHNFFFFNPFEGIINFDCNSNGMMEFFRLPYRRRSQMVLEQLSFILLVLIVNLLFQLKC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6423.t22 | Gene3D | G3DSA:2.120.10.30 | TolB | 2 | 210 | 2.9E-45 |
| 2 | g6423.t22 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 12 | 196 | 1.8E-64 |
| 3 | g6423.t22 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 12 | 196 | 1.8E-64 |
| 1 | g6423.t22 | Pfam | PF03022 | Major royal jelly protein | 86 | 194 | 5.4E-27 |
| 7 | g6423.t22 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 218 | - |
| 9 | g6423.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 238 | - |
| 8 | g6423.t22 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 239 | 240 | - |
| 5 | g6423.t22 | SUPERFAMILY | SSF63825 | YWTD domain | 20 | 184 | 3.4E-6 |
| 4 | g6423.t22 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 218 | 236 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed