General information for g6423.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative L-dopachrome tautomerase yellow-f2.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t29 | isoform | g6423.t29 | 16906729 | 16909754 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t29 | cds | g6423.t29.CDS1 | 16906729 | 16906759 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t29 | cds | g6423.t29.CDS2 | 16907987 | 16908180 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t29 | cds | g6423.t29.CDS3 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon4 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t29 | cds | g6423.t29.CDS4 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon5 | 16908889 | 16909281 |
| chr_2 | g6423 | g6423.t29 | cds | g6423.t29.CDS5 | 16908889 | 16908932 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon6 | 16909335 | 16909496 |
| chr_2 | g6423 | g6423.t29 | exon | g6423.t29.exon7 | 16909561 | 16909754 |
| chr_2 | g6423 | g6423.t29 | TTS | g6423.t29 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t29 | TSS | g6423.t29 | NA | NA |
Sequences
>g6423.t29 Gene=g6423 Length=1317
ATGCAGAGCATCAATTATAAAGATTTACCTGGAGACGCAAATTTTAACTCATATGTTAAT
GTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTAACGATTCCGAGACGTAAT
ATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGAGCTGCACCACACATTAAT
CCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTGACTCAAGGGAATCGACCA
AATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGACAAATGTGATCGTTTGTGG
TTTGTAGACAATCAAATAGTTGTCCAAAGACCATCAATTTGGGCTATTGATTTGAAAACT
GATCAGCCAATAGGTCGATTTGAAATTCCTGACACGATTGTGCCAAATGGTCGAGGTCTC
GCAGCAATCACAATTGACGATGATGATTGTTTAAATACATTTGCTTATTTACCTGATTGG
ATGAATAATGCACTGTTAGTATTTTCAGCAAGTCAAGCAAAAATGTGGCGCTTCAATCAC
AACTTTTTCTTCTTTAATCCGTTCGAAGATAACTTTAAAATAATTGTTAGGATTGCAATT
CCAATGGAATGATGGAATTTTTTCGATTGCCTTATCGAAGAAGAAGCCAAATGGTTTTAG
AACAGCTTTCTTTCATCCTCTTGGTTCTCATAGTGAATTTACTGTTTCAACTGAAGTGTT
GAGAAATGAAGCACTTGCAAGTCGTCGAACACATGGTGGTGATTTCAAATTTATCGGTCA
TCGAGGTCCTCACTCACAAAGTGGTCCGCATGCTCTTGATTTGAACACAAATGTGATGTT
TTTTGCTGAAATGCAAAATAATGCAGTCAGTTGTTGGAATATTAAAAGAGATTTGAAACG
TGCAAATATGGATATTGTTGAACAAAATAATGCAACACTTATCTATCCTGTGGATTTAAA
TATTGATAATGAAAATACACTCTGGGTGCTTTCAAATCGTTTACCTCGTTTCATTTATGA
CCGCTATGATACAAATGCTTATAACTTCAACATTTGGCGAGAAAATGTCGGTGATGCTCT
CTTAGATACAACCTGCTTAACATAAATAATTATCCTCGGCTGTTGGTGCACTATGGTGAA
GTAAAATTGCAACAATTGCGAAAGAGAGTGAGATAGAGTAGAAAAGTTTCCTCTTATACA
AGTGAATTATTTTAAAATTGTTATTAAAATTCTACTGGCGCACTTTAATAAAACAAATTA
AACAATAAAACTCCGACAGACGACTTAAAATTGCTTTCGCTATTGCAATAAAATTTC
>g6423.t29 Gene=g6423 Length=203
MQSINYKDLPGDANFNSYVNVPFGVAHYGNKLFVTIPRRNMGIPSTVNMVELTGAAPHIN
PLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLWFVDNQIVVQRPSIWAIDLKT
DQPIGRFEIPDTIVPNGRGLAAITIDDDDCLNTFAYLPDWMNNALLVFSASQAKMWRFNH
NFFFFNPFEDNFKIIVRIAIPME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6423.t29 | Gene3D | G3DSA:2.120.10.30 | TolB | 2 | 198 | 0.0e+00 |
| 2 | g6423.t29 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 12 | 194 | 0.0e+00 |
| 3 | g6423.t29 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 12 | 194 | 0.0e+00 |
| 1 | g6423.t29 | Pfam | PF03022 | Major royal jelly protein | 86 | 194 | 0.0e+00 |
| 4 | g6423.t29 | SUPERFAMILY | SSF63825 | YWTD domain | 19 | 186 | 6.8e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed