General information for g6423.t36
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as L-dopachrome tautomerase yellow-f2.
Parent gene
- The parent gene g6423 is located on chr_2: 16908911..16909754 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6423 | g6423.t36 | isoform | g6423.t36 | 16907998 | 16909754 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon1 | 16907998 | 16908180 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS1 | 16908076 | 16908180 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon2 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS2 | 16908257 | 16908338 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon3 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS3 | 16908408 | 16908431 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon4 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS4 | 16908498 | 16908758 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon5 | 16908824 | 16908841 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS5 | 16908824 | 16908841 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon6 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS6 | 16908911 | 16909281 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon7 | 16909335 | 16909496 |
| chr_2 | g6423 | g6423.t36 | cds | g6423.t36.CDS7 | 16909335 | 16909478 |
| chr_2 | g6423 | g6423.t36 | exon | g6423.t36.exon8 | 16909561 | 16909754 |
| chr_2 | g6423 | g6423.t36 | TTS | g6423.t36 | 16909746 | 16909746 |
| chr_2 | g6423 | g6423.t36 | TSS | g6423.t36 | NA | NA |
Sequences
>g6423.t36 Gene=g6423 Length=1295
TTTAACTCATATGTTAATGTACCTTTTGGTGTGGCTCATTATGGAAATAAGCTTTTTGTA
ACGATTCCGAGACGTAATATGGGAATTCCGAGTACTGTCAACATGGTCGAATTAACAGGA
GCTGCACCACACATTAATCCTCTTTTAATAAGTTATCCAAATTTAAATATGAATACATTG
ACTCAAGGGAATCGACCAAATGCTGAAAAAATTGTTTCAGTTTATCGTCCTCGAGTGGAC
AAATGTGATCGTTTGTGGTTTGTAGATACCGGTGTATTGGAATATCCAAACAATCAAATA
GTTGTCCAAAGACCATCAATTTGGGCTATTGATTTGAAAACTGATCAGCCAATAGGTCGA
TTTGAAATTCCTGACACGATTGTGCCAAATGGTCGAGGTCTCGCAGCAATCACAATTGAC
GATGATGATTGTTTAAATACATTTGCTTATTTACCTGATTGGATGAATAATGCACTGTTA
GTATTTTCAGCAAGTCAAGCAAAAATGTGGCGCTTCAATCACAACTTTTTCTTCTTTAAT
CCGTTCGAAGGTGATTTTAATGTCGATGGATTGCAATTCCAATGGAATGATGGAATTTTT
TCGATTGCCTTATCGAAGAAGAAGCCAAATGGTTTTAGAACAGCTTTCTTTCATCCTCTT
GGTTCTCATAGTGAATTTACTGTTTCAACTGAAGTGTTGAGAAATGAAGCACTTGCAAGT
CGTCGAACACATGGTGGTGATTTCAAATTTATCGGTCATCGAGGTCCTCACTCACAAAGT
GGTCCGCATGCTCTTGATTTGAACACAAATGTGATGTTTTTTGCTGAAATGCAAAATAAT
GCAGTCAGTTGTTGGAATATTAAAAGAGATTTGAAACGTGCAAATATGGATATTGTTGAA
CAAAATAATGCAACACTTATCTATCCTGTGGATTTAAATATTGATAATGAAAATACACTC
TGGGTGCTTTCAAATCGTTTACCTCGTTTCATTTATGACCGCTATGATACAAATGCTTAT
AACTTCAACATTTGGCGAGAAAATGTCGGTGATGCTCTCTTAGATACAACCTGCTTAACA
TAAATAATTATCCTCGGCTGTTGGTGCACTATGGTGAAGTAAAATTGCAACAATTGCGAA
AGAGAGTGAGATAGAGTAGAAAAGTTTCCTCTTATACAAGTGAATTATTTTAAAATTGTT
ATTAAAATTCTACTGGCGCACTTTAATAAAACAAATTAAACAATAAAACTCCGACAGACG
ACTTAAAATTGCTTTCGCTATTGCAATAAAATTTC
>g6423.t36 Gene=g6423 Length=334
MGIPSTVNMVELTGAAPHINPLLISYPNLNMNTLTQGNRPNAEKIVSVYRPRVDKCDRLW
FVDTGVLEYPNNQIVVQRPSIWAIDLKTDQPIGRFEIPDTIVPNGRGLAAITIDDDDCLN
TFAYLPDWMNNALLVFSASQAKMWRFNHNFFFFNPFEGDFNVDGLQFQWNDGIFSIALSK
KKPNGFRTAFFHPLGSHSEFTVSTEVLRNEALASRRTHGGDFKFIGHRGPHSQSGPHALD
LNTNVMFFAEMQNNAVSCWNIKRDLKRANMDIVEQNNATLIYPVDLNIDNENTLWVLSNR
LPRFIYDRYDTNAYNFNIWRENVGDALLDTTCLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6423.t36 | Gene3D | G3DSA:2.120.10.30 | TolB | 1 | 334 | 0.0e+00 |
| 2 | g6423.t36 | PANTHER | PTHR10009 | PROTEIN YELLOW-RELATED | 1 | 332 | 0.0e+00 |
| 3 | g6423.t36 | PANTHER | PTHR10009:SF10 | L-DOPACHROME TAUTOMERASE YELLOW-F-RELATED | 1 | 332 | 0.0e+00 |
| 5 | g6423.t36 | PRINTS | PR01366 | Major royal jelly protein family signature | 78 | 102 | 2.2e-06 |
| 4 | g6423.t36 | PRINTS | PR01366 | Major royal jelly protein family signature | 257 | 279 | 2.2e-06 |
| 1 | g6423.t36 | Pfam | PF03022 | Major royal jelly protein | 46 | 332 | 0.0e+00 |
| 6 | g6423.t36 | SUPERFAMILY | SSF101898 | NHL repeat | 43 | 300 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed