General information for g6495.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Maltase 2.
Parent gene
- The parent gene g6495 is located on chr_2: 17280924..17283329 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6495 | g6495.t1 | isoform | g6495.t1 | 17280924 | 17283329 |
| chr_2 | g6495 | g6495.t1 | exon | g6495.t1.exon1 | 17280924 | 17281880 |
| chr_2 | g6495 | g6495.t1 | cds | g6495.t1.CDS1 | 17280924 | 17281880 |
| chr_2 | g6495 | g6495.t1 | exon | g6495.t1.exon2 | 17281939 | 17282324 |
| chr_2 | g6495 | g6495.t1 | cds | g6495.t1.CDS2 | 17281939 | 17282324 |
| chr_2 | g6495 | g6495.t1 | exon | g6495.t1.exon3 | 17282374 | 17282386 |
| chr_2 | g6495 | g6495.t1 | cds | g6495.t1.CDS3 | 17282374 | 17282386 |
| chr_2 | g6495 | g6495.t1 | exon | g6495.t1.exon4 | 17282440 | 17282547 |
| chr_2 | g6495 | g6495.t1 | cds | g6495.t1.CDS4 | 17282440 | 17282547 |
| chr_2 | g6495 | g6495.t1 | exon | g6495.t1.exon5 | 17282616 | 17282795 |
| chr_2 | g6495 | g6495.t1 | cds | g6495.t1.CDS5 | 17282616 | 17282795 |
| chr_2 | g6495 | g6495.t1 | exon | g6495.t1.exon6 | 17282850 | 17283329 |
| chr_2 | g6495 | g6495.t1 | cds | g6495.t1.CDS6 | 17282850 | 17283329 |
| chr_2 | g6495 | g6495.t1 | TSS | g6495.t1 | NA | NA |
| chr_2 | g6495 | g6495.t1 | TTS | g6495.t1 | NA | NA |
Sequences
>g6495.t1 Gene=g6495 Length=2124
ATGAAAGTTATTCTTATATTTTATTTTTTTGCAAAATTAACATTTGCTGAAAAAGATTGG
TGGAAGACAGCAAACATCTATCAAATTTATCCACGTAGTTTTAAAGATTCAGATGATGAT
GGAATTGGTGATATTCAGGGAATAATTCAAAAATTAAATTATATAAAAGAACTTAATGTT
ACTGCAATATGGTTAAATTCATTTTTTAAATCTCCACAAGTCGATCTTGGTTATGATGTT
GAAGATTTTTATAATGTCGATCCAATTTTCGGAACAATGGCAGATCTTGAAGAATTATTT
GAGAAAGTTCATGAATTGGAATTAAAAATAATTTTAGATTTGATACCGAATCATACTTCA
GACTTTCATAAATGGTTCATTAAATCAGTAATAAGAGAAGGAAAATATACAGATTATTAT
GTGTGGCATGATGGTAAACCTAATCGTGAAGGCGGTCAAAATATTGAGCCAAATAATTGG
CAAGCAGTTTTCTCAACTCGTGCATGGTCATGGAACGAACATCGACAGCAATATTATTTG
CATCAATTTACAAGTAGTCAACCAGATTTAAATTATCGAAATCCCGCTGTAGTACAAGAA
ATGAAGGACATTTTGACATTTTGGCTTGAAAAGGGTGTAGACGGTTTTCGTGTTGTTGCA
ACAAATCATTTATTTGAAGTCGAAGATTTAAGAGACGAAATTCAAACTGGTTGGACTAAT
GACCCTAATAATTATGGTTTTACACATCACCATTACACTAAAGATTTGGATGAAACTTAT
GGAAATACAAGAGTTATTTTTACAGACGCTTATGCAAATTTAACTTTCACGATGCGGTAT
TATGGTTCTGAAATCGAACCAAACGCACATTTTCCTTTCAACTATCTTCTTATTGATAAA
CTAAATGAAAATTCGAATGCACATGATTTTAAAAGAGAAATTGATGAATGGTTCATAAAC
TTGCCAAATGCTGATGCAACATCAAACTGGATTCTCGGAAATCACGATAAACCAAGATTA
GCTTCACGCTATGGCATTAAGAGAGTCGATGGGATGCTGATGCTTTTACTACTTCTTCCC
GGAGTATCTATTACTTGGAATGGCGATGAAATCGGAATGGTTGATTTTCGTGAAGGAATA
TCTTGGGAAGATACTGTTGATCCTCAAGCTTGCAATATAAATGATCCCATAAATTACAAA
TGGGTATCCAGAGATCCACAAAGAACACCATTTCAATGGGATTCAACACATGCAGCTGGC
TTTTGTACAACATGTAAGTCATGGTTGCCAGTTAATGACAATTATCGAATTTTAAATTTA
GAAAATCAAAGAACTGCTGATAAAAGTTTCTTCAAACTATTCAAAAAACTTTCATCACTA
CGAAAGAATGAAATTTTCGTAAATGGTAATTTTGAATCATATTCTCTTGGAAGTGAAATT
TTTGCATTCAAACGAACATACAATCTTGGAGTTTATATTATTATAATTAATCTTAGCAAT
AATCAGCACACAATCAACATCCACGAAATTAGTGAATTTAACTATTTTTTGCAAGTGATT
ATAGCAGGATCACGTTCAAATTATAATGATGGCGAAATAGTGCATGCTAAAGAATTACTT
TTGAATGGATATGATGCACTTGTATTAAAGAAAAAAAATGAAGAAGAATGTTCAAATAAT
TTTAACAAAATCTGCCGCTATTACATTGATCATAATAATCGCTATACTTGCATTATCGAA
GATGTCGATAAAATTTTAACTTCAATTTCTGGTTCTCATATTTCACCACTTTTTACAGAT
ACGAATGTTACTCAAGTTTATTTAAAAAACTCAGTTTTAACTCAAATTCCATCAATTATC
TTTAGTAAATTTCTAAATCTTGAATTTTTATCAATTACCAATTGTTCTTTGGGCGGTATC
TTTGATACAATTCCATCATGCAACAAGTTGACTCACCTAGATGCAAGCTTTAATAACATT
TATCATCTTTCAAATACTGCATTCAAGAATTGTAAAAATTTAAAGACTATCGATATAACC
GGAAATTCACTTAAAGTTATAAGCAGAGAAATTTTTGATTTAAATCAAAATTTGAACAAA
ATCATTCTCAATGGTGAAATATGA
>g6495.t1 Gene=g6495 Length=707
MKVILIFYFFAKLTFAEKDWWKTANIYQIYPRSFKDSDDDGIGDIQGIIQKLNYIKELNV
TAIWLNSFFKSPQVDLGYDVEDFYNVDPIFGTMADLEELFEKVHELELKIILDLIPNHTS
DFHKWFIKSVIREGKYTDYYVWHDGKPNREGGQNIEPNNWQAVFSTRAWSWNEHRQQYYL
HQFTSSQPDLNYRNPAVVQEMKDILTFWLEKGVDGFRVVATNHLFEVEDLRDEIQTGWTN
DPNNYGFTHHHYTKDLDETYGNTRVIFTDAYANLTFTMRYYGSEIEPNAHFPFNYLLIDK
LNENSNAHDFKREIDEWFINLPNADATSNWILGNHDKPRLASRYGIKRVDGMLMLLLLLP
GVSITWNGDEIGMVDFREGISWEDTVDPQACNINDPINYKWVSRDPQRTPFQWDSTHAAG
FCTTCKSWLPVNDNYRILNLENQRTADKSFFKLFKKLSSLRKNEIFVNGNFESYSLGSEI
FAFKRTYNLGVYIIIINLSNNQHTINIHEISEFNYFLQVIIAGSRSNYNDGEIVHAKELL
LNGYDALVLKKKNEEECSNNFNKICRYYIDHNNRYTCIIEDVDKILTSISGSHISPLFTD
TNVTQVYLKNSVLTQIPSIIFSKFLNLEFLSITNCSLGGIFDTIPSCNKLTHLDASFNNI
YHLSNTAFKNCKNLKTIDITGNSLKVISREIFDLNQNLNKIILNGEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 18 | g6495.t1 | CDD | cd11328 | AmyAc_maltase | 17 | 472 | 0.0 |
| 11 | g6495.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 20 | 462 | 3.3E-152 |
| 12 | g6495.t1 | Gene3D | G3DSA:3.90.400.10 | - | 120 | 194 | 3.3E-152 |
| 10 | g6495.t1 | Gene3D | G3DSA:2.60.40.1180 | - | 477 | 552 | 3.2E-6 |
| 9 | g6495.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 562 | 706 | 4.4E-19 |
| 3 | g6495.t1 | PANTHER | PTHR10357 | ALPHA-AMYLASE FAMILY MEMBER | 15 | 559 | 1.2E-219 |
| 4 | g6495.t1 | PANTHER | PTHR10357:SF177 | FI17312P1-RELATED | 15 | 559 | 1.2E-219 |
| 2 | g6495.t1 | Pfam | PF00128 | Alpha amylase, catalytic domain | 43 | 377 | 1.0E-95 |
| 1 | g6495.t1 | Pfam | PF13855 | Leucine rich repeat | 649 | 705 | 5.6E-8 |
| 14 | g6495.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 15 | g6495.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 16 | g6495.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 11 | - |
| 17 | g6495.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 13 | g6495.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 707 | - |
| 21 | g6495.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 649 | 670 | 7.104 |
| 20 | g6495.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 673 | 694 | 5.756 |
| 19 | g6495.t1 | SMART | SM00642 | aamy | 28 | 408 | 3.5E-119 |
| 7 | g6495.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 18 | 463 | 4.01E-114 |
| 5 | g6495.t1 | SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 469 | 551 | 2.08E-5 |
| 6 | g6495.t1 | SUPERFAMILY | SSF52058 | L domain-like | 601 | 705 | 4.08E-16 |
| 8 | g6495.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01215 (glucan 1,6-alpha-glucosidase)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed