General information for g65.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g65 is located on chr_3: 471047..471740 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g65 | g65.t1 | isoform | g65.t1 | 471047 | 471740 |
| chr_3 | g65 | g65.t1 | exon | g65.t1.exon1 | 471047 | 471285 |
| chr_3 | g65 | g65.t1 | cds | g65.t1.CDS1 | 471047 | 471285 |
| chr_3 | g65 | g65.t1 | exon | g65.t1.exon2 | 471695 | 471740 |
| chr_3 | g65 | g65.t1 | cds | g65.t1.CDS2 | 471695 | 471740 |
| chr_3 | g65 | g65.t1 | TSS | g65.t1 | NA | NA |
| chr_3 | g65 | g65.t1 | TTS | g65.t1 | NA | NA |
Sequences
>g65.t1 Gene=g65 Length=285
ATGCAAATCTTTGTCAAGACTCTTACTGGACCAGTACATTCAGTCGTTTGCTCATCAGGA
GATACAATTATGAGTGTCAAGGAACAATTGGAGAAGAAATATGAAGAAGGCATGCCACCA
AATCAGCAACGTCTTATCTATGCTGGAAAGAACCTTGAAGACAACCGCACTCTTGCAGAT
TACAACATCTTACATAACACAACTGTTCATATCGTGCTGAGACTTCGTGGTGGTCAACAA
TCAATTTTAGACAAGTCATTTGAATGTCAAGTTGAAGTCAAGTAA
>g65.t1 Gene=g65 Length=94
MQIFVKTLTGPVHSVVCSSGDTIMSVKEQLEKKYEEGMPPNQQRLIYAGKNLEDNRTLAD
YNILHNTTVHIVLRLRGGQQSILDKSFECQVEVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g65.t1 | Gene3D | G3DSA:3.10.20.90 | - | 1 | 92 | 0.0000000 |
| 2 | g65.t1 | PANTHER | PTHR10666 | UBIQUITIN | 1 | 81 | 0.0000000 |
| 3 | g65.t1 | PANTHER | PTHR10666:SF364 | - | 1 | 81 | 0.0000000 |
| 4 | g65.t1 | PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 0.0000001 |
| 5 | g65.t1 | PRINTS | PR00348 | Ubiquitin signature | 55 | 76 | 0.0000001 |
| 1 | g65.t1 | Pfam | PF00240 | Ubiquitin family | 3 | 76 | 0.0000000 |
| 9 | g65.t1 | ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 78 | 25.3130000 |
| 7 | g65.t1 | SMART | SM00213 | ubq_7 | 1 | 74 | 0.0000000 |
| 6 | g65.t1 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed