General information for g6525.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6525 is located on chr_2: 17476643..17480128 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6525 | g6525.t1 | TTS | g6525.t1 | 17476330 | 17476330 |
| chr_2 | g6525 | g6525.t1 | isoform | g6525.t1 | 17476643 | 17480128 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon1 | 17476643 | 17476655 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS1 | 17476643 | 17476655 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon2 | 17476742 | 17476794 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS2 | 17476742 | 17476794 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon3 | 17476850 | 17476971 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS3 | 17476850 | 17476971 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon4 | 17477032 | 17477259 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS4 | 17477032 | 17477259 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon5 | 17478165 | 17478327 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS5 | 17478165 | 17478327 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon6 | 17478399 | 17478481 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS6 | 17478399 | 17478481 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon7 | 17479335 | 17479422 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS7 | 17479335 | 17479422 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon8 | 17479480 | 17479865 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS8 | 17479480 | 17479865 |
| chr_2 | g6525 | g6525.t1 | exon | g6525.t1.exon9 | 17479957 | 17480128 |
| chr_2 | g6525 | g6525.t1 | cds | g6525.t1.CDS9 | 17479957 | 17480128 |
| chr_2 | g6525 | g6525.t1 | TSS | g6525.t1 | NA | NA |
Sequences
>g6525.t1 Gene=g6525 Length=1308
ATGGAAATAATAAACGCTGATATGATTGAACAACATCAAACACTACAGAGAACTGATTCA
CTTTCAACAATTGCTAGTTCTGCAGCAGCAGCTCAATTTATAAAACTTTCTACTGAATCA
AATCAGTACATTTTAACAGGAGATAATTTTATTTTACCAAACAACAATCATACAAAACGT
GAAGCTTCATCGTGTACCACAACATTCGATACATTCATTACAGAAAAAAATTGTTCTGAA
AGAAAAAGAAAAATTTTAATAACGACAGTTGTGATAATAATTTCCATAATTGTTTTGCTG
TTAATTATTGTGCCAATTATTCATTTCATATTTTTAAAAAATTCACATAATGTTGAAAAT
GAAGAAACATCAACAAATGAGAGTTTTGATAACACTACGATTATCACAACAACAAACACA
GTGAAAAATATTCCTGATTTCTTTGTAACAAGACATGAATGGGGAGCTAAGAAATTAAAA
AATGGCATCGCAAAATTATCTCTTCCAATTAAAAGAATTATCATTGCACACACAGCGGGA
ATTTCATGTTTCAGTGAGACAACATGTAAAGAACTTGTCAAACAAATTGAAAATTCAAAT
TCACATCTTGATGATATTCCATATAACTTTTTGATTGGTGGCGATGTAAAACCAACTGGA
ACAACGCCAAAACAAGTAAAAGTAATAAGATCGGAAGAAGAAAGAAGAAACAAGAGAAAG
GAAGACCAATCCAGAGGTGGTCATTATGCGACTAATAAACTTGGTCTTCCTTTCCTCTCG
TTTCTTCTTTCTTCTTCCGGTCTTATTACTTTTACTTGTTTTGGCGTTGTTCCAGTTGGT
TTTACTGGAGTTGTCTTCATAATTGTTTTCTTTGGTAATGGTGGTGGTGGTGATTCAACA
GAATACAATTCGATTGGTATTTGCATTACTTTTATTGGAAATTATGCAACAAATACACCT
TCAGAAGATCAATTGAAGGTTTTTGAAATATTTTTGGAGTATTTTAAGGAATTTATAGAA
GATGAATACATCATTTTGAAACAAGACGATTTAATAGATACAAATTTAAAAGCAGTTGCT
TTAAATGATGCTTTGATTGATTTACAAAATTTTTATCCTTTGCAAAAAACATATAGAAGA
AAAGATTGGAATGCTGAGCAAAGAAAAGCTGAAAGAAAATTTTACCGTGTTTTAGATTGG
GTGATTTTATCGCATACAGTAACAAGTCAATGTAACACAGTACCAAAGTGTGCAACTATT
ATTAAAACGATACAAACGAAAGCTTTAAATAATGGGACTAGTATTTGA
>g6525.t1 Gene=g6525 Length=435
MEIINADMIEQHQTLQRTDSLSTIASSAAAAQFIKLSTESNQYILTGDNFILPNNNHTKR
EASSCTTTFDTFITEKNCSERKRKILITTVVIIISIIVLLLIIVPIIHFIFLKNSHNVEN
EETSTNESFDNTTIITTTNTVKNIPDFFVTRHEWGAKKLKNGIAKLSLPIKRIIIAHTAG
ISCFSETTCKELVKQIENSNSHLDDIPYNFLIGGDVKPTGTTPKQVKVIRSEEERRNKRK
EDQSRGGHYATNKLGLPFLSFLLSSSGLITFTCFGVVPVGFTGVVFIIVFFGNGGGGDST
EYNSIGICITFIGNYATNTPSEDQLKVFEIFLEYFKEFIEDEYIILKQDDLIDTNLKAVA
LNDALIDLQNFYPLQKTYRRKDWNAEQRKAERKFYRVLDWVILSHTVTSQCNTVPKCATI
IKTIQTKALNNGTSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g6525.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 143 | 217 | 4.2E-17 |
| 13 | g6525.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 373 | 434 | 1.9E-6 |
| 2 | g6525.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 104 | 215 | 2.2E-28 |
| 5 | g6525.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 104 | 215 | 2.2E-28 |
| 3 | g6525.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 296 | 371 | 2.2E-28 |
| 6 | g6525.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 296 | 371 | 2.2E-28 |
| 1 | g6525.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 377 | 428 | 2.2E-28 |
| 4 | g6525.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 377 | 428 | 2.2E-28 |
| 14 | g6525.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 84 | - |
| 18 | g6525.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 111 | - |
| 16 | g6525.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 112 | 267 | - |
| 17 | g6525.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 268 | 291 | - |
| 15 | g6525.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 292 | 435 | - |
| 11 | g6525.t1 | SMART | SM00701 | pgrp | 149 | 352 | 2.9E-5 |
| 9 | g6525.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 147 | 215 | 9.18E-13 |
| 10 | g6525.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 379 | 430 | 4.68E-6 |
| 7 | g6525.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 85 | 107 | - |
| 8 | g6525.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 268 | 290 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | MF |
| GO:0008270 | zinc ion binding | MF |
| GO:0009253 | peptidoglycan catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
