General information for g6549.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Polypeptide N-acetylgalactosaminyltransferase 5.
Parent gene
- The parent gene g6549 is located on chr_2: 17612608..17613894 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6549 | g6549.t14 | isoform | g6549.t14 | 17609387 | 17612835 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon1 | 17609387 | 17609393 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon2 | 17610088 | 17610281 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS1 | 17610272 | 17610281 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon3 | 17610408 | 17610493 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS2 | 17610408 | 17610493 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon4 | 17610549 | 17610782 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS3 | 17610549 | 17610782 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon5 | 17610849 | 17610949 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS4 | 17610849 | 17610949 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon6 | 17611007 | 17611230 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS5 | 17611007 | 17611230 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon7 | 17611334 | 17611677 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS6 | 17611334 | 17611677 |
| chr_2 | g6549 | g6549.t14 | exon | g6549.t14.exon8 | 17612615 | 17612835 |
| chr_2 | g6549 | g6549.t14 | cds | g6549.t14.CDS7 | 17612615 | 17612671 |
| chr_2 | g6549 | g6549.t14 | TSS | g6549.t14 | 17613807 | 17613807 |
| chr_2 | g6549 | g6549.t14 | TTS | g6549.t14 | NA | NA |
Sequences
>g6549.t14 Gene=g6549 Length=1411
AAGTTTGAATGAAAACACAAAAAATTTCGTACATCAATCTGCACCATCAACCAAACTCAA
TGTCTAATTATTCGAGAATGTTTCGTGGACGTATACGTACGAGTACTTGTAGAATTATTC
TAATAACTTCTTTAGCATGGCTTCTAATAGACGTGATCATAATTATGAAATACACTGATG
GTCTCAATGGCGGATTATTTAAAAAATCTAGAGATAATGAGGTTCATGAAGATAAATTTA
TCAGTCACCATCAACTTGACGAAGATCCAATTGTTAACGATGATGAAATAAATACAAATT
TAAATAATGCTGATAATGATTTTAACAATGATGATGACGTGATACACATATCGAAAACAT
ATCGATCGACAGATCTAAAGAAATGGCGGCCAGCGCCGGTGGTGCGTGAAAATGTAGGAA
AACCAGGTGAAATGGGCAAGCCGGTCAAAATGAAATCATATCAGCAGGAAGAAATGAAAG
AGAAATTCAAAGAAAATCAATTCAATTTGTTAGCAAGTGATATGATATGGTTGAATCGAT
CGCTCGCTGATGTGCGGCACAAAGACTGTCGAACTAAAACATACCCAAGTAGATTGCCAA
CAACAAGTATAGTTATAGTTTTTCATAATGAAGCATGGAGCACATTGCTCAGAACAATAT
GGAGTGTAATTAATCGTTCACCACGACCGTTATTAAAAGAAATCATTCTCGTTGATGATG
CAAGCGAGCGTGAATATTTAGGTGAAAAATTAGAGGAATATGTAAAAACACTGCCTGTTC
CAACATCAGTTTTACGCACCGGTAAAAGGTCTGGTCTCATTAGAGCACGTTTATTGGGTG
CTGCTGCTGTAAAAGGTCAAGTTATAACTTTTCTCGATGCTCATTGTGAATGTACTGAAG
GTTGGTTAGAACCTTTGTTGTCGAGAATTGCTTTGGACAGAAAAACAGTTGTTTGTCCAA
TAATCGATGTTATTAGTGATGAAACGTTTGAATATGTTACTGCTTCTGATCAAACTTGGG
GTGGTTTTAATTGGAAGCTCAATTTTAGATGGTATCGAGTACCTGCTAGAGAAATGGCAA
GAAGAAATAATGATAGGACTTCACCTCTTCGAACGCCAACTATGGCGGGTGGTTTGTTTT
CAATAGATAAAGATTATTTCTATGAAATTGGTTCATATGACGAGGGAATGGATATTTGGG
GTAAGTTTAAATACAAATGATAGATTTGGCAATGCGGCGGAATTTTGGAAATTGCTCCCT
GTAGCCACGTTGGTCATGTTTTCAGAGATAAAAGTCCATATACTTTCCCTGGCGGTGTGG
CAAATATTGTACTTAAAAATGCTGCTCGTGTTGCAGCTGTTTGGCTTGACGAATGGAAAG
AATTTTACTTCGCTATGAGTCCAGGTGCACG
>g6549.t14 Gene=g6549 Length=351
MKYTDGLNGGLFKKSRDNEVHEDKFISHHQLDEDPIVNDDEINTNLNNADNDFNNDDDVI
HISKTYRSTDLKKWRPAPVVRENVGKPGEMGKPVKMKSYQQEEMKEKFKENQFNLLASDM
IWLNRSLADVRHKDCRTKTYPSRLPTTSIVIVFHNEAWSTLLRTIWSVINRSPRPLLKEI
ILVDDASEREYLGEKLEEYVKTLPVPTSVLRTGKRSGLIRARLLGAAAVKGQVITFLDAH
CECTEGWLEPLLSRIALDRKTVVCPIIDVISDETFEYVTASDQTWGGFNWKLNFRWYRVP
AREMARRNNDRTSPLRTPTMAGGLFSIDKDYFYEIGSYDEGMDIWGKFKYK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6549.t14 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 69 | 350 | 0 |
| 2 | g6549.t14 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 70 | 346 | 0 |
| 3 | g6549.t14 | PANTHER | PTHR11675:SF101 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 | 70 | 346 | 0 |
| 1 | g6549.t14 | Pfam | PF00535 | Glycosyl transferase family 2 | 148 | 332 | 0 |
| 4 | g6549.t14 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 124 | 346 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
