General information for g6549.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Polypeptide N-acetylgalactosaminyltransferase 5.
Parent gene
- The parent gene g6549 is located on chr_2: 17612608..17613894 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6549 | g6549.t19 | isoform | g6549.t19 | 17611334 | 17612758 |
| chr_2 | g6549 | g6549.t19 | exon | g6549.t19.exon1 | 17611334 | 17611677 |
| chr_2 | g6549 | g6549.t19 | cds | g6549.t19.CDS1 | 17611336 | 17611677 |
| chr_2 | g6549 | g6549.t19 | exon | g6549.t19.exon2 | 17612615 | 17612758 |
| chr_2 | g6549 | g6549.t19 | cds | g6549.t19.CDS2 | 17612615 | 17612671 |
| chr_2 | g6549 | g6549.t19 | TSS | g6549.t19 | NA | NA |
| chr_2 | g6549 | g6549.t19 | TTS | g6549.t19 | NA | NA |
Sequences
>g6549.t19 Gene=g6549 Length=488
ATGTTTCGTGGACGTATACGTACGAGTACTTGTAGAATTATTCTAATAACTTCTTTAGCA
TGGCTTCTAATAGACGTGATCATAATTATGAAATACACTGATGGTCTCAATGGCGGATTA
TTTAAAAAATCTAGAGATAATGAGGTTCATGAAGATAAATTTATCAGTCACCATCAACTT
GACGAAGATCCAATTGTTAACGATGATGAAATAAATACAAATTTAAATAATGCTGATAAT
GATTTTAACAATGATGATGACGTGATACACATATCGAAAACATATCGATCGACAGATCTA
AAGAAATGGCGGCCAGCGCCGGTGGTGCGTGAAAATGTAGGAAAACCAGGTGAAATGGGC
AAGCCGGTCAAAATGAAATCATATCAGCAGGAAGAAATGAAAGAGAAATTCAAAGAAAAT
CAATTCAATTTGTTAGCAAGTGATATGATATGGTTGAATCGATCGCTCGCTGATGTGCGG
CACAAAGA
>g6549.t19 Gene=g6549 Length=133
MKYTDGLNGGLFKKSRDNEVHEDKFISHHQLDEDPIVNDDEINTNLNNADNDFNNDDDVI
HISKTYRSTDLKKWRPAPVVRENVGKPGEMGKPVKMKSYQQEEMKEKFKENQFNLLASDM
IWLNRSLADVRHK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6549.t19 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 67 | 133 | 0 |
| 1 | g6549.t19 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 79 | 131 | 0 |
| 2 | g6549.t19 | PANTHER | PTHR11675:SF47 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 13 | 79 | 131 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed