Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6585 g6585.t10 TTS g6585.t10 17716314 17716314
chr_2 g6585 g6585.t10 isoform g6585.t10 17717072 17717693
chr_2 g6585 g6585.t10 exon g6585.t10.exon1 17717072 17717693
chr_2 g6585 g6585.t10 cds g6585.t10.CDS1 17717072 17717560
chr_2 g6585 g6585.t10 TSS g6585.t10 17717854 17717854

Sequences

>g6585.t10 Gene=g6585 Length=622
GATTTTTATTAATAATCAAATCTTTATTTAACATCATCAATTTTACTTTAAGTGGAATCC
GAAAATTACAACGCTTCCAGGACTTTATTTAATTACAATTTTCTTACCACGATGTTCTGT
ATTTACACTTCGAATGATCTCATTTGTATGTTCTATCATCAATTTTTATTTCATCATTGA
GATACGATCAAATATTGAAAAGAAGAAATCAGATGATTATGATATACTGTTGAATTCTCT
ATCAATCGTTTTATTGCCACCTATGTATTTTTTCTCATTAATATATTATACGGACATACC
AGCAATCACAACTATCCTCAGTACAATATACTTTTCAATGAAGAGTCAGCATGTTCTTTC
ATCGATTTGTGGCTTTCTAAGTGTATTAATGCGTCAAACTAACATTTGTTGGGTTGCTGG
AATTCTTGGAATGAATATAATTGATGCAATGATTGCAAAAGTCTATCCTAATATTGATTT
GAAAAAATCTTCAACTAAACACCTGTATGTGGCAATCAAAAATCATTTGAAGAAACCAAA
AATGTTATATGAACTTATTTTGAAAATTCTCATAAATTTTTATGGCTATATAATTGTCAT
TCTCTGTTTTGTACTGTTCCTT

>g6585.t10 Gene=g6585 Length=163
MISFVCSIINFYFIIEIRSNIEKKKSDDYDILLNSLSIVLLPPMYFFSLIYYTDIPAITT
ILSTIYFSMKSQHVLSSICGFLSVLMRQTNICWVAGILGMNIIDAMIAKVYPNIDLKKSS
TKHLYVAIKNHLKKPKMLYELILKILINFYGYIIVILCFVLFL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g6585.t10 PANTHER PTHR12989 ALPHA-1,2-GLUCOSYLTRANSFERASE ALG10 3 163 1.1E-22
3 g6585.t10 PANTHER PTHR12989:SF10 DOL-P-GLC:GLC(2)MAN(9)GLCNAC(2)-PP-DOL ALPHA-1,2-GLUCOSYLTRANSFERASE-RELATED 3 163 1.1E-22
1 g6585.t10 Pfam PF04922 DIE2/ALG10 family 3 163 6.3E-29
8 g6585.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 30 -
13 g6585.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 31 52 -
12 g6585.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 53 63 -
14 g6585.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 84 -
9 g6585.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 85 90 -
15 g6585.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 111 -
11 g6585.t10 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 112 140 -
16 g6585.t10 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 141 162 -
10 g6585.t10 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 163 163 -
5 g6585.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 31 53 -
7 g6585.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 63 85 -
4 g6585.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 92 114 -
6 g6585.t10 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 140 162 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity MF
GO:0006488 dolichol-linked oligosaccharide biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values