Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g6669 | g6669.t1 | TSS | g6669.t1 | 18014147 | 18014147 |
chr_2 | g6669 | g6669.t1 | isoform | g6669.t1 | 18014191 | 18017019 |
chr_2 | g6669 | g6669.t1 | exon | g6669.t1.exon1 | 18014191 | 18014242 |
chr_2 | g6669 | g6669.t1 | cds | g6669.t1.CDS1 | 18014191 | 18014242 |
chr_2 | g6669 | g6669.t1 | exon | g6669.t1.exon2 | 18014312 | 18014407 |
chr_2 | g6669 | g6669.t1 | cds | g6669.t1.CDS2 | 18014312 | 18014407 |
chr_2 | g6669 | g6669.t1 | exon | g6669.t1.exon3 | 18015026 | 18016928 |
chr_2 | g6669 | g6669.t1 | cds | g6669.t1.CDS3 | 18015026 | 18016928 |
chr_2 | g6669 | g6669.t1 | exon | g6669.t1.exon4 | 18016995 | 18017019 |
chr_2 | g6669 | g6669.t1 | cds | g6669.t1.CDS4 | 18016995 | 18017019 |
chr_2 | g6669 | g6669.t1 | TTS | g6669.t1 | 18017083 | 18017083 |
>g6669.t1 Gene=g6669 Length=2076
ATGATCAAAATTAAATTAATTTTGCTTAATATTGTAATTTTAGTTAATACAGTATATTGT
GATCGAACAAAAGATAAAATTTATGAAAATATAAGTGGGCATATGTGCTTCAGACGGCTT
AATGCAACACATCAGACTGGATGTTCATCTGCAGGAAAATCAAGAGGATCTGTAGGAGTT
CTACATTTAATTAGCAGTGAAGACGATATAAATTTTATCATTAACGATCCACCTTCTCCG
CCATACGCTCCGATTATTTTACCAAATCATTTCACTCGAGAAAATATAATTAAGCTAAGA
GATTCAAATTATGTGTCAGCTATAGTACTTGTTAATGACACAAGTGATTTAGACAACTTT
TCTCAAGAATCAAAATGTCCTAATCAATTTTTTAGACACGCTAAACAGCCTGTATGTGAT
TCGAAAAATCAAAATACAGTTTGGAATCCTTTCGGAACTGGACTATTACACGAAAACTTT
GACATTCCAATCATCTTCTTGGCGAAGAAAGAAGAATCAGATAAAGTGATCAAATGCTAT
AATGATTTCAACAAAGCATCATCACGTAAATCATTATGTAGCATAGAAATTAATTCATTT
ATGGCTGCATCAGGCAATTCGGAAATATGTATAAGGAGATCAAGAAGTTTGGCAATAATT
CGTCAACTAACTTTTTGTGATCCTTTACAAGGCAAAAATGTTTATGGAACTTTGTATCCC
CGAGAAATTGTCAATCCAATTAATCGAACAAATGACATAGACGAGAAATTCATTATTGTT
TCTGCTCACTTCGATACAACATCAATGTTTGATGGAATAGCTTTAGGTGCAATGGAATTT
AGTTCAGTTGCAACACTCATTAGCTCAGCACATTTTTTGAAAAAGATTATCAAAAAAGAT
AAGAAAAGCAAGTATAACATTCTCTTTATGTTATTTAATGGTGAATCATATGATTATATT
GGATCACAAAGATTTATCTATGATTTAAAGAAAAATGATTCATTTCCTTCACCATCATCA
TATACTCGACCACTAACATTAGACAATATTGTTATGATGATTGATATTGGTGCCCTTGAT
GATTTTGATAGTGTTTCAATATACCATCTAAATGAATCGGAATCTTTTGCATCTAAATTT
ACATCTGCAATAAATAGCTACAATAATAAATTAAAACTTAATGTCAATATCAATGCAGTA
AATTCTAACAATTTGCCTCCTGTTTCTGCGCAAATGTTTTTAAGAGAAAATCCAAACTTT
CCAACTTTAATTTTTGCATCGAAAAAGCCAAAAAACAAATTTTATCATTCAGTATATGAT
GATGTAAAAAATATGAAATTTTCATATTATAATACAAGTGAAGATTTTGATCAACTTGAT
GACTCAACAAAAATAACTCATTTTCCATCTGACTCTATTCAAATAAAAATTCGTAATGTT
GCCACACTAATATCACTCGGTCTGTACAATCTACTTAACGAAGATAACAAGTATGCAGAG
AATTTAATTGCAAGTTCAACGTTAGTTGATGAATTTTTATATTGCTACTTAAAAGCAACT
AAATGTCGTTTATTTGACTCTATATTTGTCTTTTCAAATGATTTTAATGGTCTTGATTAT
CCACCACAACGATACGTGAGTGTACAAGCTGCAATTACATTAGAAGCTACTGGATGGGCA
TATAGAGTTTTAGGATTTGTTCTCAGTCAAAAAATTGAGAATATTCAAAAAGAAAATTGC
ACAGTGTTACCATATTATTGGATTCCAGGAAGTTTAAAAACTGGTGAATGTCGTCTTACT
ACTCAAAATTTAAGTTATGCATTAAGCCCAGCATTTGAAGAAGAAGGATACAACTACAAA
AGCAACTTATATTCCACTTGGACTGAATCAACATGGAATGATCTCTCAGCACGCATATTT
TTACAACCATCAACAGCACATGAATCTCTCACCTTTATTATTGGTTTAATTATGCTGATT
TTATCTTTTATATTGGTTTATTTTATAAATTCAAAGGCTGAAATTTTATTCAATGATATC
AACACAGAACATGTAGCGTTACCTGCTCAGTGCTAA
>g6669.t1 Gene=g6669 Length=691
MIKIKLILLNIVILVNTVYCDRTKDKIYENISGHMCFRRLNATHQTGCSSAGKSRGSVGV
LHLISSEDDINFIINDPPSPPYAPIILPNHFTRENIIKLRDSNYVSAIVLVNDTSDLDNF
SQESKCPNQFFRHAKQPVCDSKNQNTVWNPFGTGLLHENFDIPIIFLAKKEESDKVIKCY
NDFNKASSRKSLCSIEINSFMAASGNSEICIRRSRSLAIIRQLTFCDPLQGKNVYGTLYP
REIVNPINRTNDIDEKFIIVSAHFDTTSMFDGIALGAMEFSSVATLISSAHFLKKIIKKD
KKSKYNILFMLFNGESYDYIGSQRFIYDLKKNDSFPSPSSYTRPLTLDNIVMMIDIGALD
DFDSVSIYHLNESESFASKFTSAINSYNNKLKLNVNINAVNSNNLPPVSAQMFLRENPNF
PTLIFASKKPKNKFYHSVYDDVKNMKFSYYNTSEDFDQLDDSTKITHFPSDSIQIKIRNV
ATLISLGLYNLLNEDNKYAENLIASSTLVDEFLYCYLKATKCRLFDSIFVFSNDFNGLDY
PPQRYVSVQAAITLEATGWAYRVLGFVLSQKIENIQKENCTVLPYYWIPGSLKTGECRLT
TQNLSYALSPAFEEEGYNYKSNLYSTWTESTWNDLSARIFLQPSTAHESLTFIIGLIMLI
LSFILVYFINSKAEILFNDINTEHVALPAQC
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
7 | g6669.t1 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 189 | 460 | 2.4E-20 |
3 | g6669.t1 | PANTHER | PTHR21092 | NICASTRIN | 9 | 676 | 1.5E-138 |
2 | g6669.t1 | Pfam | PF18266 | Nicastrin small lobe | 36 | 203 | 4.7E-47 |
1 | g6669.t1 | Pfam | PF05450 | Nicastrin | 256 | 489 | 2.0E-57 |
10 | g6669.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
11 | g6669.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
12 | g6669.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 15 | - |
14 | g6669.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
9 | g6669.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 649 | - |
13 | g6669.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 650 | 669 | - |
8 | g6669.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 670 | 691 | - |
5 | g6669.t1 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 224 | 453 | 1.48E-16 |
6 | g6669.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
4 | g6669.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 649 | 671 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016485 | protein processing | BP |
GO:0016021 | integral component of membrane | CC |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.