General information for g6715.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sialin.
Parent gene
- The parent gene g6715 is located on chr_2: 18275270..18277193 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6715 | g6715.t1 | isoform | g6715.t1 | 18275270 | 18277193 |
| chr_2 | g6715 | g6715.t1 | exon | g6715.t1.exon1 | 18275270 | 18275286 |
| chr_2 | g6715 | g6715.t1 | cds | g6715.t1.CDS1 | 18275270 | 18275286 |
| chr_2 | g6715 | g6715.t1 | exon | g6715.t1.exon2 | 18275351 | 18275594 |
| chr_2 | g6715 | g6715.t1 | cds | g6715.t1.CDS2 | 18275351 | 18275594 |
| chr_2 | g6715 | g6715.t1 | exon | g6715.t1.exon3 | 18275651 | 18275692 |
| chr_2 | g6715 | g6715.t1 | cds | g6715.t1.CDS3 | 18275651 | 18275692 |
| chr_2 | g6715 | g6715.t1 | exon | g6715.t1.exon4 | 18275984 | 18276230 |
| chr_2 | g6715 | g6715.t1 | cds | g6715.t1.CDS4 | 18275984 | 18276230 |
| chr_2 | g6715 | g6715.t1 | exon | g6715.t1.exon5 | 18276285 | 18276979 |
| chr_2 | g6715 | g6715.t1 | cds | g6715.t1.CDS5 | 18276285 | 18276979 |
| chr_2 | g6715 | g6715.t1 | exon | g6715.t1.exon6 | 18277035 | 18277193 |
| chr_2 | g6715 | g6715.t1 | cds | g6715.t1.CDS6 | 18277035 | 18277193 |
| chr_2 | g6715 | g6715.t1 | TSS | g6715.t1 | NA | NA |
| chr_2 | g6715 | g6715.t1 | TTS | g6715.t1 | NA | NA |
Sequences
>g6715.t1 Gene=g6715 Length=1404
ATGAGTAATGAACATTTATCTTCAGATGAAACACCATTATATTTAAGAAAACGCTACCTT
ATTGTCTTTCTTGCCTTTCTTGGTTATGTCAATTTATATACAATGCGAGTTGATCTCAGT
GTAGCAATTGTAGCTCTCACAGAGAATCGATCAGTTAGTAATGAGGATGGATCAATTAAA
TATGAACAATATTTTGATTGGAATTCAAAAGAAAAAGGAGTTGCACTTAGTGCATTTTTT
TATGGATATGTTTGCACTCAATTTATAGGAGGCTACATCGCATCTAAATTTAGTGGTAAA
CTGGTGTTTGGTTCAGGAATTCTCGGATCTTCAATTTGTACAATGTGTACACCAATTCTA
TGCTATCAAGGAATTTATTACCTGTACATTGTTCGATTAATTGTGGGAATATTTAGTGGT
CTATCTTTTCCGGCAGTCAATGCTGTTTATTCAAAATGGAGCACACCAATGGAACGATCG
CGTATGGCTGCATTCGGAATTTCAGGAATTTATCTAGGAGCAGTAATTGCAATGCTTTTA
TCAGGATGGCTTGCCCAATATTATACTTGGGAATGGATTTTCTATACTTTTGGGATAGCA
GGTTTTGTTTGGAGTTGCATTTGGTTTCTTATTGTACGTGAATCACCAAGTTTAGATAAA
TTTATGCTAGAAAGTGAAAGAGATTTCATTATGAATAATTTAAATGATCAAGAATTATCT
TCATCAAAGAAAATTCCATGGATATCAATTTTTACTTCAATGCCAGTCTATGCGGTTTCT
ATAGCACATTTTGCATATTCTTGGGGTTATTACACTTTACTTACACAATTACCATCTTAT
ATGCGAGACATAGTTGATTTTGATCTCGAAAAAAGTGGTTACGTGAGCGCTATCCCTTAT
CTGGTACTAACAATATTACTTCTTCCATCAGGATATTTAGCAGATTGGTTTCAAATTAAA
AATCTTCTATCAACATCGCAAGTTAGAAAGTTTTTTAACAATACATCTTTCTTTGGACAA
ATGGTATTTCTTCTCCTTGCGGGTTATTTTACTAATAGCATTCAAATTGTCACATGTATC
ACTTTATCTATTGGATTGGGTGCATTCTCAATGTCAGGATTTTTAGCAAATACCTTGGAT
ATAGCACCACAATATAGTAGCATTGTTCTTGGTTTCTCGAATTCTATTGCAACTCTTCCT
GGTCTCATTTCTCCTATTATTACTGGTTATATTGTACAAACTCCGTCCGATTCAGAGTAC
AAAATTGTTTTCTTCATTGCAAGTGGTATCTATATAATTGGAATTTTCTTTTATGCTATA
TATGCCACTGGAAAAGTTCAACCATGGGCTTTACCATCAATGAGTGAAATGCAAGCCGTT
CAATTGCAAGAAGAAAGAAAATAA
>g6715.t1 Gene=g6715 Length=467
MSNEHLSSDETPLYLRKRYLIVFLAFLGYVNLYTMRVDLSVAIVALTENRSVSNEDGSIK
YEQYFDWNSKEKGVALSAFFYGYVCTQFIGGYIASKFSGKLVFGSGILGSSICTMCTPIL
CYQGIYYLYIVRLIVGIFSGLSFPAVNAVYSKWSTPMERSRMAAFGISGIYLGAVIAMLL
SGWLAQYYTWEWIFYTFGIAGFVWSCIWFLIVRESPSLDKFMLESERDFIMNNLNDQELS
SSKKIPWISIFTSMPVYAVSIAHFAYSWGYYTLLTQLPSYMRDIVDFDLEKSGYVSAIPY
LVLTILLLPSGYLADWFQIKNLLSTSQVRKFFNNTSFFGQMVFLLLAGYFTNSIQIVTCI
TLSIGLGAFSMSGFLANTLDIAPQYSSIVLGFSNSIATLPGLISPIITGYIVQTPSDSEY
KIVFFIASGIYIIGIFFYAIYATGKVQPWALPSMSEMQAVQLQEERK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g6715.t1 | CDD | cd17318 | MFS_SLC17 | 23 | 442 | 1.90071E-138 |
| 6 | g6715.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 14 | 221 | 2.4E-39 |
| 5 | g6715.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 241 | 447 | 1.3E-27 |
| 2 | g6715.t1 | PANTHER | PTHR11662 | SOLUTE CARRIER FAMILY 17 | 16 | 458 | 8.0E-148 |
| 3 | g6715.t1 | PANTHER | PTHR11662:SF437 | GH23975P | 16 | 458 | 8.0E-148 |
| 1 | g6715.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 33 | 405 | 5.6E-48 |
| 9 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 19 | - |
| 22 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 46 | - |
| 17 | g6715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 47 | 73 | - |
| 28 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 94 | - |
| 8 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 95 | 100 | - |
| 31 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 120 | - |
| 19 | g6715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 121 | 125 | - |
| 27 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 126 | 150 | - |
| 11 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 151 | 161 | - |
| 29 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 162 | 186 | - |
| 15 | g6715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 187 | 191 | - |
| 24 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 212 | - |
| 12 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 213 | 246 | - |
| 26 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 271 | - |
| 18 | g6715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 272 | 296 | - |
| 30 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 319 | - |
| 7 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 320 | 330 | - |
| 21 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 349 | - |
| 14 | g6715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 350 | 354 | - |
| 23 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 355 | 376 | - |
| 13 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 377 | 387 | - |
| 25 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 388 | 410 | - |
| 16 | g6715.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 411 | 421 | - |
| 20 | g6715.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 441 | - |
| 10 | g6715.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 442 | 467 | - |
| 45 | g6715.t1 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 20 | 446 | 21.99 |
| 4 | g6715.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 8 | 448 | 6.28E-73 |
| 39 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 37 | - |
| 37 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 73 | 95 | - |
| 40 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 102 | 124 | - |
| 42 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 128 | 150 | - |
| 43 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 33 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 212 | - |
| 44 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 272 | - |
| 36 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 292 | 314 | - |
| 41 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 331 | 350 | - |
| 38 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 376 | - |
| 35 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 385 | 407 | - |
| 34 | g6715.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 444 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K08193 (MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed