General information for g6752.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t12 | isoform | g6752.t12 | 18477977 | 18479913 |
| chr_2 | g6752 | g6752.t12 | exon | g6752.t12.exon1 | 18477977 | 18478109 |
| chr_2 | g6752 | g6752.t12 | cds | g6752.t12.CDS1 | 18477978 | 18478109 |
| chr_2 | g6752 | g6752.t12 | exon | g6752.t12.exon2 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t12 | cds | g6752.t12.CDS2 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t12 | exon | g6752.t12.exon3 | 18478726 | 18478770 |
| chr_2 | g6752 | g6752.t12 | cds | g6752.t12.CDS3 | 18478726 | 18478770 |
| chr_2 | g6752 | g6752.t12 | exon | g6752.t12.exon4 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t12 | cds | g6752.t12.CDS4 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t12 | exon | g6752.t12.exon5 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t12 | cds | g6752.t12.CDS5 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t12 | exon | g6752.t12.exon6 | 18479761 | 18479913 |
| chr_2 | g6752 | g6752.t12 | cds | g6752.t12.CDS6 | 18479761 | 18479761 |
| chr_2 | g6752 | g6752.t12 | TSS | g6752.t12 | NA | NA |
| chr_2 | g6752 | g6752.t12 | TTS | g6752.t12 | NA | NA |
Sequences
>g6752.t12 Gene=g6752 Length=945
CAATAATAGATTTTGTGGAATCCAAATATGAAGAATACTTGACAGCTGAGTCACGTGTTC
ACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTATGTTTGTATTTCATTGCACCATCAG
GACATGGATTGAAGCAGCTCGACATAGAATTCATGCAAAGATTACATGACAAAGTCAATG
TTATTCCTGTAATTGCCAAAGCAGATACACTCACGCCAGAAGAAATGCAACAGTTTAAAA
AACAAGTGTTAAATGAAATCGCACAAAATAAAATCAAGATCTACGATTTTCCAGAACCTC
TTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAGTTACGTACACGTGTTCCATTTGCTG
TTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGAAGAAAAGTTAGAGGTAGAAAATATC
CCTATGGAGTTGTTGAAGTGGAAAATCTTGATCATTGTGACTTCATTGCTCTTCGAAATA
TGGTTGTTCGAACACATTTACAAGACCTAAAGGACGTTACTAACAACGTTCACTACGAAA
ATTATCGATGTCGAAAATTAGCTGGTCTTGGTAACGATGGAAAAACTAAACTTTCAAATA
ATTTATGCAATCCAGGAAACGTCATGAACTCGTTCGTGACTGTTTGGAATCCTCTTGCAC
AAATGGAAGAGGAAAAACGTGAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATGG
AACAAGTATTTGAAATGAAAGTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTCG
AACTTACCAGACGTCACGAAGAAAGAAAGAAGGCACTTGAACTTCAAATTCGTGAATTAG
AAGAACGCCGAAAAGCATTTGAACAAGAAAAAGCAGAATGGGAGCAACAGAATAACGTTA
CACTTGAGGAATTGAGACGAAAGAGTTTGGAAGCCAATAGCAAAG
>g6752.t12 Gene=g6752 Length=264
MQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPEPLEDEEEAKALR
QLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALRNMVVRTHLQDLK
DVTNNVHYENYRCRKLAGLGNDGKTKLSNNLCNPGNVMNSFVTVWNPLAQMEEEKREHDS
KMKKMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKKALELQIRELEERRKAFEQEK
AEWEQQNNVTLEELRRKSLEANSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6752.t12 | Coils | Coil | Coil | 168 | 202 | - |
| 6 | g6752.t12 | Coils | Coil | Coil | 212 | 253 | - |
| 5 | g6752.t12 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 140 | 7.5E-58 |
| 2 | g6752.t12 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 1 | 260 | 4.1E-108 |
| 3 | g6752.t12 | PANTHER | PTHR18884 | SEPTIN | 1 | 260 | 4.1E-108 |
| 9 | g6752.t12 | PIRSF | PIRSF006698 | Septin | 1 | 264 | 4.8E-83 |
| 1 | g6752.t12 | Pfam | PF00735 | Septin | 1 | 141 | 3.4E-58 |
| 8 | g6752.t12 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 1 | 138 | 54.195 |
| 4 | g6752.t12 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 3 | 103 | 5.03E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
