General information for g6752.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t17 | isoform | g6752.t17 | 18478172 | 18480553 |
| chr_2 | g6752 | g6752.t17 | exon | g6752.t17.exon1 | 18478172 | 18478334 |
| chr_2 | g6752 | g6752.t17 | cds | g6752.t17.CDS1 | 18478172 | 18478334 |
| chr_2 | g6752 | g6752.t17 | exon | g6752.t17.exon2 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t17 | cds | g6752.t17.CDS2 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t17 | exon | g6752.t17.exon3 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t17 | cds | g6752.t17.CDS3 | 18479421 | 18479634 |
| chr_2 | g6752 | g6752.t17 | exon | g6752.t17.exon4 | 18479757 | 18479921 |
| chr_2 | g6752 | g6752.t17 | exon | g6752.t17.exon5 | 18480059 | 18480553 |
| chr_2 | g6752 | g6752.t17 | TSS | g6752.t17 | NA | NA |
| chr_2 | g6752 | g6752.t17 | TTS | g6752.t17 | NA | NA |
Sequences
>g6752.t17 Gene=g6752 Length=1271
CAACGAGAAAAATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAAAACAG
CATAAACAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAGGATTC
AAATAAATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGACCAAA
AGTAAAAGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTACAGAAA
GGCCGTTAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTCGGAAA
ATCGACTCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACACCCTGG
TCCGTCATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTACGTGA
AAACGGTGTTAATTTAACATTGACTATTGTTGATACACCAGGTAAATTAATAAAAAGAAA
TCATATAAATGATTTCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAAGAATA
CTTGACAGCTGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTATG
TTTGTATTTCATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTCAGTAA
TGCAAAGATTACATGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTCA
CGCCAGAAGAAATGCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAAA
TCAAGATCTACGATTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGTC
AGTTACGTACACGTGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAAG
GAAGAAAAGTTAGAGGTAGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTTGATC
ATTGTGACTTCATTGCTCTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTAAAGG
ACGTTACTAACAACGTTCACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTTGGTA
ACGATGGAAAAACTAAACTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAAAAAC
GTGAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAAATGA
AAGTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGTCACG
AAGAAAGAAAG
>g6752.t17 Gene=g6752 Length=180
MQQFKKQVLNEIAQNKIKIYDFPEPLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKV
RGRKYPYGVVEVENLDHCDFIALRNMVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGK
TKLSNKNPLAQMEEEKREHDSKMKKMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6752.t17 | Coils | Coil | Coil | 129 | 163 | - |
| 7 | g6752.t17 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 116 | 3.0E-42 |
| 5 | g6752.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 144 | - |
| 4 | g6752.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 144 | - |
| 6 | g6752.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 180 | - |
| 2 | g6752.t17 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 2 | 180 | 1.3E-83 |
| 3 | g6752.t17 | PANTHER | PTHR18884 | SEPTIN | 2 | 180 | 1.3E-83 |
| 1 | g6752.t17 | Pfam | PF00735 | Septin | 2 | 117 | 9.6E-44 |
| 9 | g6752.t17 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 1 | 114 | 40.832 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
