General information for g6752.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t18 | isoform | g6752.t18 | 18478177 | 18480558 |
| chr_2 | g6752 | g6752.t18 | exon | g6752.t18.exon1 | 18478177 | 18478334 |
| chr_2 | g6752 | g6752.t18 | cds | g6752.t18.CDS1 | 18478178 | 18478334 |
| chr_2 | g6752 | g6752.t18 | exon | g6752.t18.exon2 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t18 | cds | g6752.t18.CDS2 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t18 | exon | g6752.t18.exon3 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t18 | cds | g6752.t18.CDS3 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t18 | exon | g6752.t18.exon4 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t18 | cds | g6752.t18.CDS4 | 18479761 | 18479921 |
| chr_2 | g6752 | g6752.t18 | exon | g6752.t18.exon5 | 18480059 | 18480558 |
| chr_2 | g6752 | g6752.t18 | cds | g6752.t18.CDS5 | 18480059 | 18480477 |
| chr_2 | g6752 | g6752.t18 | TSS | g6752.t18 | NA | NA |
| chr_2 | g6752 | g6752.t18 | TTS | g6752.t18 | NA | NA |
Sequences
>g6752.t18 Gene=g6752 Length=1267
AATATCAACGAGAAAAATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAA
AACAGCATAAACAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAG
GATTCAAATAAATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGA
CCAAAAGTAAAAGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTAC
AGAAAGGCCGTTAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTC
GGAAAATCGACTCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACAC
CCTGGTCCGTCATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTA
CGTGAAAACGGTGTTAATTTAACATTGACTATTGTTGATACACCAGGTAAATTAATAAAA
AGAAATCATATAAATGATTTCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAA
GAATACTTGACAGCTGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCAC
TTATGTTTGTATTTCATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTC
ATGCAAAGATTACATGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTC
ACGCCAGAAGAAATGCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAA
ATCAAGATCTACGATTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGT
CAGTTACGTACACGTGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAA
GGAAGAAAAGTTAGAGGTAGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTTGAT
CATTGTGACTTCATTGCTCTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTAAAG
GACGTTACTAACAACGTTCACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTTGGT
AACGATGGAAAAACTAAACTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAAAAA
CGTGAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAAATG
AAAGTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGTCAC
GAAGAAA
>g6752.t18 Gene=g6752 Length=395
MKEKEANELNHHQDSNKLATERQEKEKQQAIVRPKVKELDGYVGFANLPNQVYRKAVKKG
FEFTLMVVGESGLGKSTLINSMFLSDIYNQEQHPGPSFRAKKTVAVETTKVLLRENGVNL
TLTIVDTPGKLIKRNHINDFWTPIIDFVESKYEEYLTAESRVHRKAISDSRVHLCLYFIA
PSGHGLKQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFP
EPLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIAL
RNMVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKM
KKMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6752.t18 | CDD | cd01850 | CDC_Septin | 59 | 333 | 4.26924E-143 |
| 6 | g6752.t18 | Coils | Coil | Coil | 346 | 380 | - |
| 5 | g6752.t18 | Gene3D | G3DSA:3.40.50.300 | - | 37 | 333 | 1.0E-116 |
| 11 | g6752.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 12 | g6752.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 361 | - |
| 9 | g6752.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 361 | - |
| 10 | g6752.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 395 | - |
| 2 | g6752.t18 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 21 | 395 | 1.1E-187 |
| 3 | g6752.t18 | PANTHER | PTHR18884 | SEPTIN | 21 | 395 | 1.1E-187 |
| 7 | g6752.t18 | PIRSF | PIRSF006698 | Septin | 2 | 395 | 6.1E-144 |
| 1 | g6752.t18 | Pfam | PF00735 | Septin | 59 | 334 | 1.1E-113 |
| 13 | g6752.t18 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 59 | 331 | 101.666 |
| 4 | g6752.t18 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 43 | 304 | 1.94E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
- This transcript has been annotated with K16944 (septin 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
