General information for g6752.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein peanut.
Parent gene
- The parent gene g6752 is located on chr_2: 18481851..18490178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6752 | g6752.t6 | isoform | g6752.t6 | 18476034 | 18479913 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon1 | 18476034 | 18476085 |
| chr_2 | g6752 | g6752.t6 | TTS | g6752.t6 | 18476063 | 18476063 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon2 | 18476703 | 18476867 |
| chr_2 | g6752 | g6752.t6 | cds | g6752.t6.CDS1 | 18476705 | 18476867 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon3 | 18477976 | 18478109 |
| chr_2 | g6752 | g6752.t6 | cds | g6752.t6.CDS2 | 18477976 | 18478109 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon4 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t6 | cds | g6752.t6.CDS3 | 18478169 | 18478334 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon5 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t6 | cds | g6752.t6.CDS4 | 18479196 | 18479358 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon6 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t6 | cds | g6752.t6.CDS5 | 18479421 | 18479705 |
| chr_2 | g6752 | g6752.t6 | exon | g6752.t6.exon7 | 18479761 | 18479913 |
| chr_2 | g6752 | g6752.t6 | cds | g6752.t6.CDS6 | 18479761 | 18479761 |
| chr_2 | g6752 | g6752.t6 | TSS | g6752.t6 | NA | NA |
Sequences
>g6752.t6 Gene=g6752 Length=1118
CAATAATAGATTTTGTGGAATCCAAATATGAAGAATACTTGACAGCTGAGTCACGTGTTC
ACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTATGTTTGTATTTCATTGCACCATCAG
GACATGGATTGAAGCAGCTCGACATAGAATTCATGCAAAGATTACATGACAAAGTCAATG
TTATTCCTGTAATTGCCAAAGCAGATACACTCACGCCAGAAGAAATGCAACAGTTTAAAA
AACAAGTGTTAAATGAAATCGCACAAAATAAAATCAAGATCTACGATTTTCCAGAACCTC
TTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAGTTACGTACACGTGTTCCATTTGCTG
TTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGAAGAAAAGTTAGAGGTAGAAAATATC
CCTATGGAGTTGTTGAAGTGGAAAATCTTGATCATTGTGACTTCATTGCTCTTCGAAATA
TGGTTGTTCGAACACATTTACAAGACCTAAAGGACGTTACTAACAACGTTCACTACGAAA
ATTATCGATGTCGAAAATTAGCTGGTCTTGGTAACGATGGAAAAACTAAACTTTCAAATA
AGAATCCTCTTGCACAAATGGAAGAGGAAAAACGTGAACATGATTCAAAGATGAAGAAAA
TGGAAGCTGAAATGGAACAAGTATTTGAAATGAAAGTTAAAGAGAAGAAGCAAAAATTGA
AAGATTCTGAACTCGAACTTACCAGACGTCACGAAGAAAGAAAGAAGGCACTTGAACTTC
AAATTCGTGAATTAGAAGAACGCCGAAAAGCATTTGAACAAGAAAAAGCAGAATGGGAGC
AACAGAATAACGTTACACTTGAGGAATTGAGACGAAAGAGTTTGGAAGCCAATAGCAAAG
AGACGGGTTCATTGGCATCACGAACGTCAGAGGAATCAAAGAAAAGTCGTGTATTTGGAT
CATTATTACGACGACATACGTCATTTGGTGCGCCCGATTCAAGAACTTTAACAGCACCTC
CAACAATTTCAGCACCTATCATGCATAATGATAATCAGGAATAAGTAACTATGGACGGTA
AAGAGAAAAAGAAAGAAAAGAAAAAAGGCTTGTTTTAA
>g6752.t6 Gene=g6752 Length=303
MQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPEPLEDEEEAKALR
QLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALRNMVVRTHLQDLK
DVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMKKMEAEMEQVFEM
KVKEKKQKLKDSELELTRRHEERKKALELQIRELEERRKAFEQEKAEWEQQNNVTLEELR
RKSLEANSKETGSLASRTSEESKKSRVFGSLLRRHTSFGAPDSRTLTAPPTISAPIMHND
NQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6752.t6 | Coils | Coil | Coil | 153 | 187 | - |
| 8 | g6752.t6 | Coils | Coil | Coil | 197 | 238 | - |
| 7 | g6752.t6 | Coils | Coil | Coil | 299 | 303 | - |
| 6 | g6752.t6 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 140 | 9.1E-58 |
| 5 | g6752.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 303 | - |
| 4 | g6752.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 303 | - |
| 2 | g6752.t6 | PANTHER | PTHR18884:SF123 | SEPTIN-7 | 1 | 260 | 7.0E-112 |
| 3 | g6752.t6 | PANTHER | PTHR18884 | SEPTIN | 1 | 260 | 7.0E-112 |
| 11 | g6752.t6 | PIRSF | PIRSF006698 | Septin | 1 | 251 | 4.9E-82 |
| 1 | g6752.t6 | Pfam | PF00735 | Septin | 1 | 141 | 4.6E-58 |
| 10 | g6752.t6 | ProSiteProfiles | PS51719 | Septin-type guanine nucleotide-binding (G) domain profile. | 1 | 138 | 54.195 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
