Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein peanut.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6752 g6752.t7 isoform g6752.t7 18476034 18479913
chr_2 g6752 g6752.t7 exon g6752.t7.exon1 18476034 18476085
chr_2 g6752 g6752.t7 TTS g6752.t7 18476063 18476063
chr_2 g6752 g6752.t7 exon g6752.t7.exon2 18477976 18478109
chr_2 g6752 g6752.t7 cds g6752.t7.CDS1 18478102 18478109
chr_2 g6752 g6752.t7 exon g6752.t7.exon3 18478165 18478334
chr_2 g6752 g6752.t7 cds g6752.t7.CDS2 18478165 18478334
chr_2 g6752 g6752.t7 exon g6752.t7.exon4 18479196 18479358
chr_2 g6752 g6752.t7 cds g6752.t7.CDS3 18479196 18479358
chr_2 g6752 g6752.t7 exon g6752.t7.exon5 18479421 18479705
chr_2 g6752 g6752.t7 cds g6752.t7.CDS4 18479421 18479705
chr_2 g6752 g6752.t7 exon g6752.t7.exon6 18479761 18479913
chr_2 g6752 g6752.t7 cds g6752.t7.CDS5 18479761 18479761
chr_2 g6752 g6752.t7 TSS g6752.t7 NA NA

Sequences

>g6752.t7 Gene=g6752 Length=957
CAATAATAGATTTTGTGGAATCCAAATATGAAGAATACTTGACAGCTGAGTCACGTGTTC
ACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTATGTTTGTATTTCATTGCACCATCAG
GACATGGATTGAAGCAGCTCGACATAGAATTCATGCAAAGATTACATGACAAAGTCAATG
TTATTCCTGTAATTGCCAAAGCAGATACACTCACGCCAGAAGAAATGCAACAGTTTAAAA
AACAAGTGTTAAATGAAATCGCACAAAATAAAATCAAGATCTACGATTTTCCAGAACCTC
TTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAGTTACGTACACGTGTTCCATTTGCTG
TTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGAAGAAAAGTTAGAGGTAGAAAATATC
CCTATGGAGTTGTTGAAGTGGAAAATCTTGATCATTGTGACTTCATTGCTCTTCGAAATA
TGGTTGTTCGAACACATTTACAAGACCTAAAGGACGTTACTAACAACGTTCACTACGAAA
ATTATCGATGTCGAAAATTAGCTGGTCTTGGTAACGATGGAAAAACTAAACTTTCAAATA
AGAATCCTCTTGCACAAATGGAAGAGGAAAAACGTGAACATGATTCAAAGATGAAGAAAA
TGGAAGCTGAAATGGAACAAGTATTTGAAATGAAAGTTAAAGAGAAGAAGCAAAAATTGA
AAGATTCTGAACTCGAACTTACCAGACGTCACGAAGAAAGAAAGAAGGTTTGCACTTGAA
CTTCAAATTCGTGAATTAGAAGAACGCCGAAAAGCATTTGAACAAGAAAAAGCAGAATGG
GAGCAACAGAATAACGTTACACTTGAGGAATTGAGACGAAAGAGTTTGGAAGCCAATAGC
AAAGAAACTATGGACGGTAAAGAGAAAAAGAAAGAAAAGAAAAAAGGCTTGTTTTAA

>g6752.t7 Gene=g6752 Length=208
MQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPEPLEDEEEAKALR
QLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALRNMVVRTHLQDLK
DVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMKKMEAEMEQVFEM
KVKEKKQKLKDSELELTRRHEERKKVCT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6752.t7 Coils Coil Coil 153 187 -
5 g6752.t7 Gene3D G3DSA:3.40.50.300 - 1 140 3.3E-58
9 g6752.t7 MobiDBLite mobidb-lite consensus disorder prediction 142 168 -
8 g6752.t7 MobiDBLite mobidb-lite consensus disorder prediction 153 168 -
10 g6752.t7 MobiDBLite mobidb-lite consensus disorder prediction 185 208 -
2 g6752.t7 PANTHER PTHR18884:SF123 SEPTIN-7 1 204 1.5E-101
3 g6752.t7 PANTHER PTHR18884 SEPTIN 1 204 1.5E-101
7 g6752.t7 PIRSF PIRSF006698 Septin 1 208 1.6E-78
1 g6752.t7 Pfam PF00735 Septin 1 141 1.7E-58
11 g6752.t7 ProSiteProfiles PS51719 Septin-type guanine nucleotide-binding (G) domain profile. 1 138 54.195
4 g6752.t7 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 3 103 9.18E-5

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed