Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein peanut.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6752 g6752.t9 isoform g6752.t9 18476034 18480558
chr_2 g6752 g6752.t9 exon g6752.t9.exon1 18476034 18476085
chr_2 g6752 g6752.t9 cds g6752.t9.CDS1 18476034 18476085
chr_2 g6752 g6752.t9 TTS g6752.t9 18476063 18476063
chr_2 g6752 g6752.t9 exon g6752.t9.exon2 18477976 18478109
chr_2 g6752 g6752.t9 cds g6752.t9.CDS2 18477976 18478109
chr_2 g6752 g6752.t9 exon g6752.t9.exon3 18478169 18478334
chr_2 g6752 g6752.t9 cds g6752.t9.CDS3 18478169 18478334
chr_2 g6752 g6752.t9 exon g6752.t9.exon4 18479196 18479358
chr_2 g6752 g6752.t9 cds g6752.t9.CDS4 18479196 18479358
chr_2 g6752 g6752.t9 exon g6752.t9.exon5 18479421 18479705
chr_2 g6752 g6752.t9 cds g6752.t9.CDS5 18479421 18479705
chr_2 g6752 g6752.t9 exon g6752.t9.exon6 18479761 18479921
chr_2 g6752 g6752.t9 cds g6752.t9.CDS6 18479761 18479921
chr_2 g6752 g6752.t9 exon g6752.t9.exon7 18479986 18480016
chr_2 g6752 g6752.t9 cds g6752.t9.CDS7 18479986 18480016
chr_2 g6752 g6752.t9 exon g6752.t9.exon8 18480093 18480558
chr_2 g6752 g6752.t9 cds g6752.t9.CDS8 18480093 18480477
chr_2 g6752 g6752.t9 TSS g6752.t9 NA NA

Sequences

>g6752.t9 Gene=g6752 Length=1458
AATATCAACGAGAAAAATCATATAAATACTAACGGAACACACACCAATAATACAGTGCAA
AACAGCATAAACAAATTAATAATGAAGGAAAAAGAGGCCAATGAATTGAATCATCATCAG
GATTCAAATAAATTGGCAACAGAACGTCAAGAAAAAGAGAAACAACAAGCAATTGTACGA
CCAAAAGTAAAAGAACTTGATGGATATGTTGGTTTTGCCAATCTACCGAATCAAGTTTAC
AGAAAGGCCGTTAAAAAAGGTTTCGAATTCACTTTGATGGTTGTGGGTGAATCGGGACTC
GGAAAATCGACTCTTATAAACTCAATGTTTTTATCTGATATTTATAATCAAGAACAACAC
CCTGGTCCGTCATTTAGAGCAAAAAAAACTGTTGCTGTTGAAACCACCAAAGTTTTATTA
CGTGAAAACGGTGTTAATTTAACATTGACTATTGTTGATACACCAGGCTTCGGAGATGCA
GTCGATAATAGCAACTGCTGGACACCAATAATAGATTTTGTGGAATCCAAATATGAAGAA
TACTTGACAGCTGAGTCACGTGTTCACCGTAAAGCAATTTCTGATAGTCGTGTTCACTTA
TGTTTGTATTTCATTGCACCATCAGGACATGGATTGAAGCAGCTCGACATAGAATTCATG
CAAAGATTACATGACAAAGTCAATGTTATTCCTGTAATTGCCAAAGCAGATACACTCACG
CCAGAAGAAATGCAACAGTTTAAAAAACAAGTGTTAAATGAAATCGCACAAAATAAAATC
AAGATCTACGATTTTCCAGAACCTCTTGAAGATGAAGAAGAAGCTAAAGCATTACGTCAG
TTACGTACACGTGTTCCATTTGCTGTTGTTGGTTCAAACACAGTTATCGAGGTTGAAGGA
AGAAAAGTTAGAGGTAGAAAATATCCCTATGGAGTTGTTGAAGTGGAAAATCTTGATCAT
TGTGACTTCATTGCTCTTCGAAATATGGTTGTTCGAACACATTTACAAGACCTAAAGGAC
GTTACTAACAACGTTCACTACGAAAATTATCGATGTCGAAAATTAGCTGGTCTTGGTAAC
GATGGAAAAACTAAACTTTCAAATAAGAATCCTCTTGCACAAATGGAAGAGGAAAAACGT
GAACATGATTCAAAGATGAAGAAAATGGAAGCTGAAATGGAACAAGTATTTGAAATGAAA
GTTAAAGAGAAGAAGCAAAAATTGAAAGATTCTGAACTCGAACTTACCAGACGTCACGAA
GAAAGAAAGAAGGCACTTGAACTTCAAATTCGTGAATTAGAAGAACGCCGAAAAGCATTT
GAACAAGAAAAAGCAGAATGGGAGCAACAGAATAACGTTACACTTGAGGAATTGAGACGA
AAGAGTTTGGAAGCCAATAGCAAAGAAACTATGGACGGTAAAGAGAAAAAGAAAGAAAAG
AAAAAAGGCTTGTTTTAA

>g6752.t9 Gene=g6752 Length=458
MKEKEANELNHHQDSNKLATERQEKEKQQAIVRPKVKELDGYVGFANLPNQVYRKAVKKG
FEFTLMVVGESGLGKSTLINSMFLSDIYNQEQHPGPSFRAKKTVAVETTKVLLRENGVNL
TLTIVDTPGFGDAVDNSNCWTPIIDFVESKYEEYLTAESRVHRKAISDSRVHLCLYFIAP
SGHGLKQLDIEFMQRLHDKVNVIPVIAKADTLTPEEMQQFKKQVLNEIAQNKIKIYDFPE
PLEDEEEAKALRQLRTRVPFAVVGSNTVIEVEGRKVRGRKYPYGVVEVENLDHCDFIALR
NMVVRTHLQDLKDVTNNVHYENYRCRKLAGLGNDGKTKLSNKNPLAQMEEEKREHDSKMK
KMEAEMEQVFEMKVKEKKQKLKDSELELTRRHEERKKALELQIRELEERRKAFEQEKAEW
EQQNNVTLEELRRKSLEANSKETMDGKEKKKEKKKGLF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g6752.t9 CDD cd01850 CDC_Septin 59 332 2.04085E-154
7 g6752.t9 Coils Coil Coil 345 379 -
6 g6752.t9 Coils Coil Coil 389 430 -
5 g6752.t9 Gene3D G3DSA:3.40.50.300 - 37 332 3.8E-124
11 g6752.t9 MobiDBLite mobidb-lite consensus disorder prediction 1 29 -
10 g6752.t9 MobiDBLite mobidb-lite consensus disorder prediction 415 458 -
12 g6752.t9 MobiDBLite mobidb-lite consensus disorder prediction 426 458 -
2 g6752.t9 PANTHER PTHR18884:SF123 SEPTIN-7 21 443 2.6E-207
3 g6752.t9 PANTHER PTHR18884 SEPTIN 21 443 2.6E-207
8 g6752.t9 PIRSF PIRSF006698 Septin 2 443 5.1E-161
1 g6752.t9 Pfam PF00735 Septin 59 333 3.4E-123
13 g6752.t9 ProSiteProfiles PS51719 Septin-type guanine nucleotide-binding (G) domain profile. 59 330 107.441
4 g6752.t9 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 43 303 6.79E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values