General information for g6763.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative phosphatidate phosphatase.
Parent gene
- The parent gene g6763 is located on chr_2: 18513276..18521639 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6763 | g6763.t1 | isoform | g6763.t1 | 18513276 | 18521176 |
| chr_2 | g6763 | g6763.t1 | exon | g6763.t1.exon1 | 18513276 | 18513519 |
| chr_2 | g6763 | g6763.t1 | cds | g6763.t1.CDS1 | 18513276 | 18513519 |
| chr_2 | g6763 | g6763.t1 | exon | g6763.t1.exon2 | 18515839 | 18515990 |
| chr_2 | g6763 | g6763.t1 | cds | g6763.t1.CDS2 | 18515839 | 18515990 |
| chr_2 | g6763 | g6763.t1 | exon | g6763.t1.exon3 | 18518758 | 18518958 |
| chr_2 | g6763 | g6763.t1 | cds | g6763.t1.CDS3 | 18518758 | 18518958 |
| chr_2 | g6763 | g6763.t1 | exon | g6763.t1.exon4 | 18520566 | 18520745 |
| chr_2 | g6763 | g6763.t1 | cds | g6763.t1.CDS4 | 18520566 | 18520745 |
| chr_2 | g6763 | g6763.t1 | exon | g6763.t1.exon5 | 18520830 | 18520953 |
| chr_2 | g6763 | g6763.t1 | cds | g6763.t1.CDS5 | 18520830 | 18520953 |
| chr_2 | g6763 | g6763.t1 | exon | g6763.t1.exon6 | 18521022 | 18521176 |
| chr_2 | g6763 | g6763.t1 | cds | g6763.t1.CDS6 | 18521022 | 18521176 |
| chr_2 | g6763 | g6763.t1 | TTS | g6763.t1 | 18521641 | 18521641 |
| chr_2 | g6763 | g6763.t1 | TSS | g6763.t1 | NA | NA |
Sequences
>g6763.t1 Gene=g6763 Length=1056
ATGGTGAATCAAAACGGAAAAACGGTCGTAGTGAAATTACCCATGGAGCAGTCACACATA
GATTCGACTGAAACATCTCCATTAAATCAGCGCCTACGTGATAACAATTCTGATATATCA
TCCTCACCCTCATCAGCTGTCAATAGTGATCAAAGTTCAAAGAAACTTTTGCATAACTCA
AGTACAAATCAATCCCGAAAAATTCTGCTTAATATTTTCGTCGATGTGATTGTACTTTGC
CTCGTCGGAAGCGCGATCGTAATTTTCTTCCTCATTGGTGAGCCTTACGAACGGGGTTTC
TTCTGTAATGATGAATCGTTACTTCATCCACACCACACGTCAACTGTCAAGCATTGGATG
CTGTTTTTGTTTGGAATTGTCGTACCTATAGTTGTGATTTTTTTCAATGAGATTGTACGT
TCAAAAAAGAATTTAGATGAAAAGAGTGAATTAAAACTTTTCAATTGGACGATATCAGCA
TGCAAGCAAAATTTATACAAATTTATTGGAATGTTTTTACTTGGTACAGCAAGCTGTCAG
CTCTTGACCGACATTGGAAAATATTCAATTGGGAGATATCGACCATATTTTATAACACTA
TGTCAGCCGATTTTATCCGATGGAACAAATTGCAGTGACCCAAAAAATTTGTATCAATAC
ATTACAAACTTTACCTGCAATAATCCGGCAGTTACTGAGAAGATGCTTAAAGATATCCGT
ATGTCTTTTCCCAGTGCTAATTCTAGTTTCTCTTTCTTTACCATGACATACTGTGCGCTT
TATCTCAACGCGCGCTTTGAATGGAACGGCACCAAAATTCTAAATTATTTTCTCCAATTT
ATGCTGATTGCTTTAGCTTGGTTCACATCACTTTCTCGTATTTCGGATTATAAACATCAC
TGGTCGGACGTTTTAGCCGGTAGCACGCTAGGTTTTCTTCTCGCAATATTTGTTTGTCAT
TTTATATTAAAACTACAGAAGCGTGAGAAATGCTCCAATTTAAAATTGCCGAGCACAAAA
TATGAATTAAGTACACAGACTCAGAATCAAATTTAA
>g6763.t1 Gene=g6763 Length=351
MVNQNGKTVVVKLPMEQSHIDSTETSPLNQRLRDNNSDISSSPSSAVNSDQSSKKLLHNS
STNQSRKILLNIFVDVIVLCLVGSAIVIFFLIGEPYERGFFCNDESLLHPHHTSTVKHWM
LFLFGIVVPIVVIFFNEIVRSKKNLDEKSELKLFNWTISACKQNLYKFIGMFLLGTASCQ
LLTDIGKYSIGRYRPYFITLCQPILSDGTNCSDPKNLYQYITNFTCNNPAVTEKMLKDIR
MSFPSANSSFSFFTMTYCALYLNARFEWNGTKILNYFLQFMLIALAWFTSLSRISDYKHH
WSDVLAGSTLGFLLAIFVCHFILKLQKREKCSNLKLPSTKYELSTQTQNQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g6763.t1 | CDD | cd03384 | PAP2_wunen | 165 | 319 | 5.66591E-62 |
| 5 | g6763.t1 | Gene3D | G3DSA:1.20.144.10 | - | 115 | 349 | 3.3E-34 |
| 23 | g6763.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - |
| 2 | g6763.t1 | PANTHER | PTHR10165 | LIPID PHOSPHATE PHOSPHATASE | 68 | 335 | 2.5E-88 |
| 3 | g6763.t1 | PANTHER | PTHR10165:SF173 | FI04477P-RELATED | 68 | 335 | 2.5E-88 |
| 1 | g6763.t1 | Pfam | PF01569 | PAP2 superfamily | 172 | 324 | 2.9E-24 |
| 6 | g6763.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 67 | - |
| 12 | g6763.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 92 | - |
| 10 | g6763.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 93 | 118 | - |
| 15 | g6763.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 119 | 139 | - |
| 7 | g6763.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 140 | 242 | - |
| 14 | g6763.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 243 | 262 | - |
| 9 | g6763.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 263 | 273 | - |
| 16 | g6763.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 274 | 292 | - |
| 8 | g6763.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 293 | 303 | - |
| 13 | g6763.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 323 | - |
| 11 | g6763.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 324 | 351 | - |
| 22 | g6763.t1 | SMART | SM00014 | acid_phosph_2 | 169 | 319 | 3.1E-29 |
| 4 | g6763.t1 | SUPERFAMILY | SSF48317 | Acid phosphatase/Vanadium-dependent haloperoxidase | 72 | 329 | 8.37E-26 |
| 21 | g6763.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 91 | - |
| 19 | g6763.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 118 | 135 | - |
| 18 | g6763.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 273 | 291 | - |
| 20 | g6763.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 301 | 323 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042577 | lipid phosphatase activity | MF |
| GO:0006644 | phospholipid metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01080 (phosphatidate phosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
