General information for g6763.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative phosphatidate phosphatase.
Parent gene
- The parent gene g6763 is located on chr_2: 18513276..18521639 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6763 | g6763.t3 | isoform | g6763.t3 | 18511735 | 18521639 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon1 | 18511735 | 18512178 |
| chr_2 | g6763 | g6763.t3 | TSS | g6763.t3 | 18511756 | 18511756 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon2 | 18513276 | 18513519 |
| chr_2 | g6763 | g6763.t3 | cds | g6763.t3.CDS1 | 18513276 | 18513519 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon3 | 18515839 | 18515987 |
| chr_2 | g6763 | g6763.t3 | cds | g6763.t3.CDS2 | 18515839 | 18515987 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon4 | 18518758 | 18518958 |
| chr_2 | g6763 | g6763.t3 | cds | g6763.t3.CDS3 | 18518758 | 18518958 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon5 | 18520566 | 18520745 |
| chr_2 | g6763 | g6763.t3 | cds | g6763.t3.CDS4 | 18520566 | 18520745 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon6 | 18520830 | 18520953 |
| chr_2 | g6763 | g6763.t3 | cds | g6763.t3.CDS5 | 18520830 | 18520953 |
| chr_2 | g6763 | g6763.t3 | exon | g6763.t3.exon7 | 18521022 | 18521639 |
| chr_2 | g6763 | g6763.t3 | cds | g6763.t3.CDS6 | 18521022 | 18521176 |
| chr_2 | g6763 | g6763.t3 | TTS | g6763.t3 | 18521641 | 18521641 |
Sequences
>g6763.t3 Gene=g6763 Length=1960
AGTGTTAAACGAATAATGTTTCAGTCTACAATGATATTTCATTCGTAACGCACGCAAATT
AGGGTTTTTTCGTGTAAAATAAGAGAGAAAAGTGCACTTGAACTTAGAGTAGAAGCAAAA
GAAGAGAGAGAAAAAATATAGCACGCGATCAGTCGGAAGTTGCAATTCACTAATAAAAAA
GATGATCGCAGTGATGAATGCGAAATATAGAAATGAAAAGTGAAGTTATTTAAAAATAAA
TTTATGTGTGCCTTATTGTGAAAATAAAAGGAATAAAAATAAAAACATAAATTTCAAAAT
ATTTGAAGCGTCAAATTCTGTATATGTGCAAAGATCCTCTTTGCCACTTTAAATGCACTG
TCATCACAATTAAATATTCGTAAATTTTTTTTTCACAAACAATATTTAGACTCGCGTGTT
CATCGCTCAAGGAAAGAAGATCAAATGGTGAATCAAAACGGAAAAACGGTCGTAGTGAAA
TTACCCATGGAGCAGTCACACATAGATTCGACTGAAACATCTCCATTAAATCAGCGCCTA
CGTGATAACAATTCTGATATATCATCCTCACCCTCATCAGCTGTCAATAGTGATCAAAGT
TCAAAGAAACTTTTGCATAACTCAAGTACAAATCAATCCCGAAAAATTCTGCTTAATATT
TTCGTCGATGTGATTGTACTTTGCCTCGTCGGAAGCGCGATCGTAATTTTCTTCCTCATT
GGTGAGCCTTACGAACGGGGTTTCTTCTGTAATGATGAATCGTTACTTCATCCACACCAC
ACGTCAACTGTCAAGCATTGGATGCTGTTTTTGTTTGGAATTGTCGTACCTATAGTTATT
TTTTTCAATGAGATTGTACGTTCAAAAAAGAATTTAGATGAAAAGAGTGAATTAAAACTT
TTCAATTGGACGATATCAGCATGCAAGCAAAATTTATACAAATTTATTGGAATGTTTTTA
CTTGGTACAGCAAGCTGTCAGCTCTTGACCGACATTGGAAAATATTCAATTGGGAGATAT
CGACCATATTTTATAACACTATGTCAGCCGATTTTATCCGATGGAACAAATTGCAGTGAC
CCAAAAAATTTGTATCAATACATTACAAACTTTACCTGCAATAATCCGGCAGTTACTGAG
AAGATGCTTAAAGATATCCGTATGTCTTTTCCCAGTGCTAATTCTAGTTTCTCTTTCTTT
ACCATGACATACTGTGCGCTTTATCTCAACGCGCGCTTTGAATGGAACGGCACCAAAATT
CTAAATTATTTTCTCCAATTTATGCTGATTGCTTTAGCTTGGTTCACATCACTTTCTCGT
ATTTCGGATTATAAACATCACTGGTCGGACGTTTTAGCCGGTAGCACGCTAGGTTTTCTT
CTCGCAATATTTGTTTGTCATTTTATATTAAAACTACAGAAGCGTGAGAAATGCTCCAAT
TTAAAATTGCCGAGCACAAAATATGAATTAAGTACACAGACTCAGAATCAAATTTAAATA
AATTCTTTTCAATTCTCTCGAGAATTTAAATGAGCTTCTTACGTACTTTTTTTTATAATT
ATTAACATAACTCGGCTCTTTTGGAAGTAGTCTTAATGAAGTAATTATTTAATAATTTAT
TATTTTATATTTTGTGTTTCATGTTTCGCCTTTTTTTGTACAATAATAAAACCTCAGCAT
TTTTTCTAAAAAAAGTTAAGGGCGATAAATCTTCTTCAGTACTGCATATTTTATTATTTT
AATTTATTCACACTCTCATGAAATGATATGTAATTTTAATTAAGCTTAAGGAATTTGAAT
GTTTGTTTTGTTTTCATCTCGAAAACAATTATGATGAGAAGGTTGTAAATATATTGGGAA
CGATTATGATGAATTGCATTTTTTCTCAAATGTCAAAAAATCAATGTGCCTTACTCCATG
ATGATGCTTTGATTAATAAAGAAATTTAAGATTATATTTT
>g6763.t3 Gene=g6763 Length=350
MVNQNGKTVVVKLPMEQSHIDSTETSPLNQRLRDNNSDISSSPSSAVNSDQSSKKLLHNS
STNQSRKILLNIFVDVIVLCLVGSAIVIFFLIGEPYERGFFCNDESLLHPHHTSTVKHWM
LFLFGIVVPIVIFFNEIVRSKKNLDEKSELKLFNWTISACKQNLYKFIGMFLLGTASCQL
LTDIGKYSIGRYRPYFITLCQPILSDGTNCSDPKNLYQYITNFTCNNPAVTEKMLKDIRM
SFPSANSSFSFFTMTYCALYLNARFEWNGTKILNYFLQFMLIALAWFTSLSRISDYKHHW
SDVLAGSTLGFLLAIFVCHFILKLQKREKCSNLKLPSTKYELSTQTQNQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g6763.t3 | CDD | cd03384 | PAP2_wunen | 164 | 318 | 5.21168E-62 |
| 5 | g6763.t3 | Gene3D | G3DSA:1.20.144.10 | - | 114 | 348 | 2.6E-34 |
| 23 | g6763.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - |
| 2 | g6763.t3 | PANTHER | PTHR10165 | LIPID PHOSPHATE PHOSPHATASE | 68 | 334 | 1.1E-86 |
| 3 | g6763.t3 | PANTHER | PTHR10165:SF173 | FI04477P-RELATED | 68 | 334 | 1.1E-86 |
| 1 | g6763.t3 | Pfam | PF01569 | PAP2 superfamily | 171 | 323 | 2.6E-24 |
| 7 | g6763.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 67 | - |
| 13 | g6763.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 92 | - |
| 10 | g6763.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 93 | 118 | - |
| 16 | g6763.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 119 | 138 | - |
| 8 | g6763.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 139 | 241 | - |
| 12 | g6763.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 242 | 261 | - |
| 9 | g6763.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 262 | 272 | - |
| 14 | g6763.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 273 | 291 | - |
| 6 | g6763.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 292 | 302 | - |
| 15 | g6763.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 303 | 322 | - |
| 11 | g6763.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 323 | 350 | - |
| 22 | g6763.t3 | SMART | SM00014 | acid_phosph_2 | 168 | 318 | 3.1E-29 |
| 4 | g6763.t3 | SUPERFAMILY | SSF48317 | Acid phosphatase/Vanadium-dependent haloperoxidase | 71 | 328 | 3.66E-26 |
| 21 | g6763.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 91 | - |
| 20 | g6763.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 119 | 138 | - |
| 19 | g6763.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 272 | 290 | - |
| 18 | g6763.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 300 | 322 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042577 | lipid phosphatase activity | MF |
| GO:0006644 | phospholipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed