General information for g6794.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein bric-a-brac 2.
Parent gene
- The parent gene g6794 is located on chr_2: 18747168..18763630 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6794 | g6794.t1 | isoform | g6794.t1 | 18747168 | 18763630 |
| chr_2 | g6794 | g6794.t1 | exon | g6794.t1.exon1 | 18747168 | 18748235 |
| chr_2 | g6794 | g6794.t1 | cds | g6794.t1.CDS1 | 18747168 | 18748235 |
| chr_2 | g6794 | g6794.t1 | exon | g6794.t1.exon2 | 18757145 | 18757171 |
| chr_2 | g6794 | g6794.t1 | cds | g6794.t1.CDS2 | 18757145 | 18757171 |
| chr_2 | g6794 | g6794.t1 | exon | g6794.t1.exon3 | 18763568 | 18763630 |
| chr_2 | g6794 | g6794.t1 | cds | g6794.t1.CDS3 | 18763568 | 18763630 |
| chr_2 | g6794 | g6794.t1 | TSS | g6794.t1 | NA | NA |
| chr_2 | g6794 | g6794.t1 | TTS | g6794.t1 | NA | NA |
Sequences
>g6794.t1 Gene=g6794 Length=1158
ATGCCATCCAATTCACCACCAAGTAAAAATCCATCACCATTAAGTATTTCCGAAAATCGA
TCTCAAGATTGCGAGGAGCCACCGACAGACTTATCAAAGTTCAACATGAAACCAAGTTTA
AACAGCAGCAACAACAATAATAAAAATAATAATAATAATGATAGTAATAACAATAGTAAG
AATAATTCACAGCAATTTTGTCTACGATGGAACAATTATCAGACAAATTTAACATGTGTT
TTCGATCAATTGCTTCAGAGTGAATCTTTTGTCGATGTGACACTCGCTTGCGATGGTAAT
CAAATTAAGGCGCACAAAATTGTGCTGTCAGCATGTAGTCCTTACTTTCAGTCCTTGTTC
TTCGATAATCCATGTCAGCATCCCATCATTATCATGCGTGATGTAAAATGGCCTGAATTA
AAAGCAATAGTTGAGTTCATGTATAAAGGCGAGATAAATGTGAATCAAGATCAAATTAGT
CCGCTGTTAGCTATTGCCGAAATGCTACAAATACGTGGCTTGGCTGAGGTAAATAGCGAG
ACTGCATCGGCCGGTGATAATTTGGCAGATACGCAAATAAAGCCCAAACAATCTACACCG
ACGGTCGATTTGACAGCGAAATCCCGCTCAAATGAAACCTCGCCCATACCAACATTTGAT
ATTGAGGAACAATTGCAGAAGCAACAGGACAAAGCAGACACGAGAAAAGCAAAAATTACG
CCTCGTGATTGGGAATCAATGGCCTCAATGGACGCGCTTAATACACAACAACAAACGTCT
CAACAATCTTCATCGAGTAAAAATCAACGAAAGCGACGATGGCCATCTGGTGAACGAAGT
AATGCCACCAACTCATCGCCAGACAATAATTTGGAAGCATCATCACCACTTTCAATCAAT
CAGCCATTATTATCACATCATCCATCACCATCACCGAATCAAATACCGCAATTCCACTTG
CCGACATCACTCGACACTCTCGCACTAAACCAATTGTCAGCGATGCATCATTCTGACGAT
ATGGAAATTAAGCCCGGCATTGCTGAAATGATTCGTGAAGAAGAAAGGACCAAAACAAGA
TCCAACGAATTGAATGCAAAATTATTGGAAAATTCAGCATGGCTTGGTGCAACTCCAGCA
AATATAACCGGTGAGTAG
>g6794.t1 Gene=g6794 Length=385
MPSNSPPSKNPSPLSISENRSQDCEEPPTDLSKFNMKPSLNSSNNNNKNNNNNDSNNNSK
NNSQQFCLRWNNYQTNLTCVFDQLLQSESFVDVTLACDGNQIKAHKIVLSACSPYFQSLF
FDNPCQHPIIIMRDVKWPELKAIVEFMYKGEINVNQDQISPLLAIAEMLQIRGLAEVNSE
TASAGDNLADTQIKPKQSTPTVDLTAKSRSNETSPIPTFDIEEQLQKQQDKADTRKAKIT
PRDWESMASMDALNTQQQTSQQSSSSKNQRKRRWPSGERSNATNSSPDNNLEASSPLSIN
QPLLSHHPSPSPNQIPQFHLPTSLDTLALNQLSAMHHSDDMEIKPGIAEMIREEERTKTR
SNELNAKLLENSAWLGATPANITGE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6794.t1 | CDD | cd18315 | BTB_POZ_BAB-like | 90 | 173 | 5.9348E-41 |
| 6 | g6794.t1 | Coils | Coil | Coil | 347 | 371 | - |
| 5 | g6794.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 64 | 214 | 9.2E-33 |
| 10 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - |
| 14 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 59 | - |
| 13 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 294 | - |
| 15 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 223 | - |
| 11 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 242 | - |
| 12 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 270 | - |
| 9 | g6794.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 294 | - |
| 2 | g6794.t1 | PANTHER | PTHR23110:SF95 | LONGITUDINALS LACKING PROTEIN-LIKE-RELATED | 59 | 361 | 1.3E-98 |
| 3 | g6794.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 59 | 361 | 1.3E-98 |
| 1 | g6794.t1 | Pfam | PF00651 | BTB/POZ domain | 81 | 180 | 9.2E-27 |
| 16 | g6794.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 91 | 156 | 21.802 |
| 8 | g6794.t1 | SMART | SM00225 | BTB_4 | 91 | 186 | 1.7E-23 |
| 4 | g6794.t1 | SUPERFAMILY | SSF54695 | POZ domain | 64 | 176 | 4.08E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K24811 (BTB/POZ domain-containing protein 18)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
