General information for g6811.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-coenzyme A synthetase.
Parent gene
- The parent gene g6811 is located on chr_2: 18840315..18844818 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6811 | g6811.t3 | TSS | g6811.t3 | 18839995 | 18839995 |
| chr_2 | g6811 | g6811.t3 | isoform | g6811.t3 | 18840315 | 18842823 |
| chr_2 | g6811 | g6811.t3 | exon | g6811.t3.exon1 | 18840315 | 18840622 |
| chr_2 | g6811 | g6811.t3 | cds | g6811.t3.CDS1 | 18840315 | 18840622 |
| chr_2 | g6811 | g6811.t3 | exon | g6811.t3.exon2 | 18842209 | 18842404 |
| chr_2 | g6811 | g6811.t3 | cds | g6811.t3.CDS2 | 18842209 | 18842404 |
| chr_2 | g6811 | g6811.t3 | exon | g6811.t3.exon3 | 18842542 | 18842823 |
| chr_2 | g6811 | g6811.t3 | cds | g6811.t3.CDS3 | 18842542 | 18842562 |
| chr_2 | g6811 | g6811.t3 | TTS | g6811.t3 | NA | NA |
Sequences
>g6811.t3 Gene=g6811 Length=786
ATGCCAGAACAAAACATTTTTCAACCAGATCCAAAACTGTCACGTTCATCTTATGTTTCA
TCATTGCAGCAGTACAATGAACTTTATAAAGAATCCATTGAACATCCAGAAAAATTCTGG
GGAAATATTGCAAAGCAATTTCATTGGGAAACTCCAGCTGATCCAAAAAATTTTTTGTCA
TATAATTTTGACATATCAAAAGGTCCAATTTCCATTAAATGGATGGAAGGAGCATCAACA
AATATTTGCTACAATCTCTTAGATCGGAACATTAAAAATGGACATGGTGATAAAATTGCA
TTTTATTGGGAAGGAAATCATCCTGAAGATTTTACACGATTTACATACCGTAAGCTGTTA
GAGGAAGTATGTCGCTTTGCTAATGTTCTCAAAATGCATGGAGTCAACAAGGGAGATCGC
GTGGCTATTTATATGCCAATGATTATGGAAACACCAATTGCTATGCTTGCATGTGCACGA
ATCGGTGCGGTTCATTCAATTGTCGTTATGTCAAAGAATTTGTAACAACATTTGTTTGTT
TTTGTTTACCGGCATTTCAATCAATCAATATATTAATTATTGATAAGAAAAAATAAAAAT
AAATGAATGTCAACTTAATTTTAAAACAAATAAAAAATAAATTACTCAACTACTGTTTAA
TTAGATTAACTCATTGCTACAATAAGAGTTTAACTTACTATCCGATTACAATAAAACATT
CAACAGGTGTTCATTCACGATACATATAAAAACGATCAGCATAAAAAATCGTGACTTTAA
TTTAGA
>g6811.t3 Gene=g6811 Length=174
MPEQNIFQPDPKLSRSSYVSSLQQYNELYKESIEHPEKFWGNIAKQFHWETPADPKNFLS
YNFDISKGPISIKWMEGASTNICYNLLDRNIKNGHGDKIAFYWEGNHPEDFTRFTYRKLL
EEVCRFANVLKMHGVNKGDRVAIYMPMIMETPIAMLACARIGAVHSIVVMSKNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6811.t3 | Gene3D | G3DSA:3.40.50.12780 | - | 60 | 171 | 0 |
| 3 | g6811.t3 | PANTHER | PTHR24095 | ACETYL-COENZYME A SYNTHETASE | 3 | 169 | 0 |
| 4 | g6811.t3 | PANTHER | PTHR24095:SF126 | ACETYL-COENZYME A SYNTHETASE, CYTOPLASMIC | 3 | 169 | 0 |
| 1 | g6811.t3 | Pfam | PF16177 | Acetyl-coenzyme A synthetase N-terminus | 25 | 85 | 0 |
| 2 | g6811.t3 | Pfam | PF00501 | AMP-binding enzyme | 93 | 168 | 0 |
| 5 | g6811.t3 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 16 | 168 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
