General information for g6811.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Acetyl-coenzyme A synthetase.
Parent gene
- The parent gene g6811 is located on chr_2: 18840315..18844818 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6811 | g6811.t4 | TSS | g6811.t4 | 18839995 | 18839995 |
| chr_2 | g6811 | g6811.t4 | isoform | g6811.t4 | 18840315 | 18843202 |
| chr_2 | g6811 | g6811.t4 | exon | g6811.t4.exon1 | 18840315 | 18840622 |
| chr_2 | g6811 | g6811.t4 | cds | g6811.t4.CDS1 | 18840315 | 18840622 |
| chr_2 | g6811 | g6811.t4 | exon | g6811.t4.exon2 | 18842209 | 18842384 |
| chr_2 | g6811 | g6811.t4 | cds | g6811.t4.CDS2 | 18842209 | 18842384 |
| chr_2 | g6811 | g6811.t4 | exon | g6811.t4.exon3 | 18842823 | 18843202 |
| chr_2 | g6811 | g6811.t4 | cds | g6811.t4.CDS3 | 18842823 | 18842887 |
| chr_2 | g6811 | g6811.t4 | TTS | g6811.t4 | NA | NA |
Sequences
>g6811.t4 Gene=g6811 Length=864
ATGCCAGAACAAAACATTTTTCAACCAGATCCAAAACTGTCACGTTCATCTTATGTTTCA
TCATTGCAGCAGTACAATGAACTTTATAAAGAATCCATTGAACATCCAGAAAAATTCTGG
GGAAATATTGCAAAGCAATTTCATTGGGAAACTCCAGCTGATCCAAAAAATTTTTTGTCA
TATAATTTTGACATATCAAAAGGTCCAATTTCCATTAAATGGATGGAAGGAGCATCAACA
AATATTTGCTACAATCTCTTAGATCGGAACATTAAAAATGGACATGGTGATAAAATTGCA
TTTTATTGGGAAGGAAATCATCCTGAAGATTTTACACGATTTACATACCGTAAGCTGTTA
GAGGAAGTATGTCGCTTTGCTAATGTTCTCAAAATGCATGGAGTCAACAAGGGAGATCGC
GTGGCTATTTATATGCCAATGATTATGGAAACACCAATTGCTATGCTTGCATGTGCACGA
ATCGAATTTTTTTCCTATTTTATTTATAGTTTGCCGGATTTTCATCAGACTCACTTGCTG
AGAGAATGAAGGACTGCAAGGCCAAAGTTTTAATCACAAGTGACGGAGCATGGCGAGGTG
AAAAATTATTGCATTTGAAAAAAATTTGTGATCAAGCACTTGACAAGGCAGAGGAATTAG
GTCACCATGTTGAAACTTGTATTGTTGTAAAACACATAAATCGAGTAACTGCACCAGTGC
CAGATCTTGTAGAAGATTTTTCAGTCGATATGCGAGATGATCGTGATTTTTGGTGGAACG
ATGAAATGGAAGATGTTGAACCTAGTTGCTATCCTGAATGGACAAGTGTTGAAGATCCAC
TTTTCATGCTTTATACAAGTGGCT
>g6811.t4 Gene=g6811 Length=182
MPEQNIFQPDPKLSRSSYVSSLQQYNELYKESIEHPEKFWGNIAKQFHWETPADPKNFLS
YNFDISKGPISIKWMEGASTNICYNLLDRNIKNGHGDKIAFYWEGNHPEDFTRFTYRKLL
EEVCRFANVLKMHGVNKGDRVAIYMPMIMETPIAMLACARIEFFSYFIYSLPDFHQTHLL
RE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6811.t4 | Gene3D | G3DSA:3.40.50.12780 | - | 60 | 171 | 0 |
| 3 | g6811.t4 | PANTHER | PTHR24095 | ACETYL-COENZYME A SYNTHETASE | 3 | 163 | 0 |
| 4 | g6811.t4 | PANTHER | PTHR24095:SF126 | ACETYL-COENZYME A SYNTHETASE, CYTOPLASMIC | 3 | 163 | 0 |
| 1 | g6811.t4 | Pfam | PF16177 | Acetyl-coenzyme A synthetase N-terminus | 25 | 85 | 0 |
| 2 | g6811.t4 | Pfam | PF00501 | AMP-binding enzyme | 93 | 170 | 0 |
| 5 | g6811.t4 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 16 | 169 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K01895 (acetyl-CoA synthetase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed