Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Inositol monophosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6814 g6814.t6 isoform g6814.t6 18877534 18878907
chr_2 g6814 g6814.t6 exon g6814.t6.exon1 18877534 18877697
chr_2 g6814 g6814.t6 exon g6814.t6.exon2 18877756 18877879
chr_2 g6814 g6814.t6 exon g6814.t6.exon3 18877935 18878199
chr_2 g6814 g6814.t6 exon g6814.t6.exon4 18878283 18878907
chr_2 g6814 g6814.t6 cds g6814.t6.CDS1 18878521 18878907
chr_2 g6814 g6814.t6 TTS g6814.t6 18879207 18879207
chr_2 g6814 g6814.t6 TSS g6814.t6 NA NA

Sequences

>g6814.t6 Gene=g6814 Length=1178
ATTTTAATACATTGTGATAATTTTAAAATATATAAAAGTTTTCATCTTTTATTTTAAAAT
TTAAATCTACAATTCTTGTGCAATATTTTTCTTTATAACCATAAAACTCAACATCAGCAT
CAACATCTATGTAAGAATTAATTTCTACTGTCACTGAATTTGAACAATTTGTCCATCAGA
TATTAAAACCCAAAAATTGTCATCTTCCTTTTCATTTTCACTAATTCTGCATTTGAATAT
TCTGAATTGTAATTGAGAACGCGCACAAGCATTATTTTAAAATCTTGTCATTTTTTGGAA
AAGGTACTTCAATAACAGTTAAATCTTCATCTTCATTGATTTTTCTTAAAACTTGTGATG
TATGCAATAATCCATGAACACTATGTTCATCGTCGTCTTCTAGCAAATAATCTTTGTTTC
CCAATGAATAAACAATCACATCTTTCTCTAAATTTCGATGCTTTTTTAACGATCATAACA
AGAGCCCCAAATGCTATCAGTGTTAAAATAAAGACGGAAAATTGTGATAACGTCATTTTA
ACTCACTTCAAAATATTCACTTCATACAGCTCATTGTATCAAGAAATTCTCAGAGAAAAA
CTGTCGAACTTAAATCGAGTGATATTGATTTTGGTAACTGAAACTGATCAACAAGTTGAG
AGACATTTAATTGATGGAATTCGAGCTAAATTTCCTGATCATGAATTATAGGAGAAGAAG
ACTCGAGCGATGGCAAAAAAGCTGTTCTTACTAATGCACCGACTTGGATTATTGACCCAG
TTGATGGAACGATGAATTTTGTCCATAGCTTTCCACATTCTGCAATTTCTGTTGCATTAT
TAGTCAATAAAATCACAGAAATTGGAATCATCTTCAATCCTGTTTTAGGTCAAAAGTTTA
CAGCAAGAAGAGGTCAAGGTGCATTCTATAATGGCCAGCAAATAAAAGTTTCGGAGAAAA
AGTCACTAGCTAATGCTTTGCTGTTCACTGAATTTGGAACAAGTCGTGATGAAGAAAAGA
CCAAAGTTGTGCTCGAAAATATAACAAAATTAGTTAAACTGGCTCATGGTTTTCGTTCAC
TAGGAGCTGCAGCTCTTAATATTTGCATGGTTGCACTTGGTGGCGCTGATTGCTATTATG
AATATGGTGTTCATGCATGGGACTATGCAGGCAAGTGA

>g6814.t6 Gene=g6814 Length=128
MNFVHSFPHSAISVALLVNKITEIGIIFNPVLGQKFTARRGQGAFYNGQQIKVSEKKSLA
NALLFTEFGTSRDEEKTKVVLENITKLVKLAHGFRSLGAAALNICMVALGGADCYYEYGV
HAWDYAGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g6814.t6 Gene3D G3DSA:3.30.540.10 - 1 51 8.8E-13
12 g6814.t6 Gene3D G3DSA:3.40.190.80 - 52 128 1.5E-21
2 g6814.t6 PANTHER PTHR20854 INOSITOL MONOPHOSPHATASE 1 127 1.2E-43
5 g6814.t6 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 15 25 2.6E-8
7 g6814.t6 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 64 3.1E-16
3 g6814.t6 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 43 61 2.6E-8
4 g6814.t6 PRINTS PR00378 Lithium-sensitive myo-inositol monophosphatase family signature 66 76 2.6E-8
8 g6814.t6 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 110 3.1E-16
6 g6814.t6 PRINTS PR00377 Inositol monophosphatase superfamily signature 120 128 3.1E-16
1 g6814.t6 Pfam PF00459 Inositol monophosphatase family 1 126 1.4E-33
10 g6814.t6 SUPERFAMILY SSF56655 Carbohydrate phosphatase 1 127 1.31E-35
9 g6814.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 10 32 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046855 inositol phosphate dephosphorylation BP
GO:0046854 phosphatidylinositol phosphate biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values