General information for g6829.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6829 is located on chr_2: 18983261..18984257 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6829 | g6829.t3 | TSS | g6829.t3 | 18982437 | 18982437 |
| chr_2 | g6829 | g6829.t3 | isoform | g6829.t3 | 18982755 | 18983261 |
| chr_2 | g6829 | g6829.t3 | exon | g6829.t3.exon1 | 18982755 | 18983261 |
| chr_2 | g6829 | g6829.t3 | cds | g6829.t3.CDS1 | 18982812 | 18983261 |
| chr_2 | g6829 | g6829.t3 | TTS | g6829.t3 | 18983503 | 18983503 |
Sequences
>g6829.t3 Gene=g6829 Length=507
AATAAAGCACCTTGCACTTTTATTAATTTATATGAGAAGCAAAACAGCACATTCTCCATG
TCAATTTTTATAATGAATGGAAATTATAAAATGCCACTTCATGATCATCCAAATATGTGT
GGGCTTTTAAGAGTAATAAGTGGTCAAATAAAAGTAGAGAGCTACACGCGAATAAAAAGT
GATATAGAAGATGAAATTCTTGTAAAAGCAGAAGAGCCAAAAATTTTAGACGAATTGAGT
GCATCGGCTGTGTTATTTCCTGAAAACTCGAATTTTCACGAAATAACTGCATTGAATGAA
CCTGCAGCATTTTTTGATATTTTAGCTCCACCTTATAGTGACTATAACGACTCAATGGAA
CCCGGATCCAGGCATTGCTCTTTTTATAAAAAAATAATGTTTGAAAATTGCGGCAAAAGT
CCGATACTAAAATTAGTGAAAATCGATGTACCAGATCATTATTATTGTGACTCTGTTGCT
TATAAGCAGCCAGATTTCATGCGATAA
>g6829.t3 Gene=g6829 Length=149
MSIFIMNGNYKMPLHDHPNMCGLLRVISGQIKVESYTRIKSDIEDEILVKAEEPKILDEL
SASAVLFPENSNFHEITALNEPAAFFDILAPPYSDYNDSMEPGSRHCSFYKKIMFENCGK
SPILKLVKIDVPDHYYCDSVAYKQPDFMR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6829.t3 | CDD | cd20289 | cupin_ADO | 1 | 94 | 0.0e+00 |
| 5 | g6829.t3 | Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 1 | 111 | 2.7e-05 |
| 2 | g6829.t3 | PANTHER | PTHR22966:SF29 | 2-AMINOETHANETHIOL DIOXYGENASE | 1 | 146 | 0.0e+00 |
| 3 | g6829.t3 | PANTHER | PTHR22966 | UNCHARACTERIZED | 1 | 146 | 0.0e+00 |
| 1 | g6829.t3 | Pfam | PF07847 | PCO_ADO | 1 | 146 | 0.0e+00 |
| 4 | g6829.t3 | SUPERFAMILY | SSF51182 | RmlC-like cupins | 2 | 94 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
