General information for g6841.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium/potassium-transporting ATPase subunit beta-2.
Parent gene
- The parent gene g6841 is located on chr_2: 19029725..19030319 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6841 | g6841.t1 | TTS | g6841.t1 | 19024410 | 19024410 |
| chr_2 | g6841 | g6841.t1 | isoform | g6841.t1 | 19025389 | 19030319 |
| chr_2 | g6841 | g6841.t1 | exon | g6841.t1.exon1 | 19025389 | 19025519 |
| chr_2 | g6841 | g6841.t1 | cds | g6841.t1.CDS1 | 19025389 | 19025519 |
| chr_2 | g6841 | g6841.t1 | exon | g6841.t1.exon2 | 19025580 | 19026029 |
| chr_2 | g6841 | g6841.t1 | cds | g6841.t1.CDS2 | 19025580 | 19026029 |
| chr_2 | g6841 | g6841.t1 | exon | g6841.t1.exon3 | 19026096 | 19026356 |
| chr_2 | g6841 | g6841.t1 | cds | g6841.t1.CDS3 | 19026096 | 19026356 |
| chr_2 | g6841 | g6841.t1 | exon | g6841.t1.exon4 | 19030184 | 19030319 |
| chr_2 | g6841 | g6841.t1 | cds | g6841.t1.CDS4 | 19030184 | 19030319 |
| chr_2 | g6841 | g6841.t1 | TSS | g6841.t1 | 19030587 | 19030587 |
Sequences
>g6841.t1 Gene=g6841 Length=978
ATGGCGGATAAAAATAAGTCAGATGGAGATGCATATCTTAATCGTCCTGAGAAACTTGGT
GCTTGGGATGGCTTTAAGCAATTTCTGTGGAATTCGGACACGAAGCAATTTATGGGCAGA
ACAAGCGGCAGTTGGTTGCGTATCCTCATCTTTTACATCATTTTCTACATCGTATTGGCC
ATTTTCTTTGTAACAATGTTTTTCATATTTGGTTCAACATTGACAAAAGAGCGACCAAAA
TATGAGCTAAAAGAGAGTCTGATTGGCACAAATCCAGGTTTAGGTTTTCGACCAATGCCC
CCAGAAAGTAACGTTGAAAGTACATTAATTTGGTATCAAAAGGACAATCCAGATAATTCT
AAATATTGGGTTGAGGAGATTGATCGTTTTTTAGAAGGTTTCAAGGGCAACAGTACAGAT
CGTGTCGATTGTAGAAACTCTCCACCAGAAGTAGGCAAAATCTGTAATGTTAATCTTGAT
GCTTTTAAACCATGCATTTCTAAAGAAAATTATGGTTATGAGCAAGGAAGACCGTGCATC
TTTTTAAAGCTCAATAAAATTTACAATTGGGAGCCAGAATATTATAACAATTCAAAACAA
TTAGCTGAAAATATGCCAAAGACTCTCGTAAAGCACATTGAAGATCGTCAGAATAAGAAA
AAGAATACAGAAGTTGTTTGGGTCTCATGTGAAGGTGAAAATCCTGCTGATATTGAAAAC
TTGGGAAATAGCATCGACTATTATAGCTTAAGTGGAGAGCAAGGATTTTTGGGAAATTAC
TTTCCATTTTTGAGCACAAAAGGCTATTTGCAGCCACTCGTTGCTGTTCAATTTAAATCT
GTTAAACCTGGTGTATTAATAAATATTGAATGCAAAGCATGGGCTAAAAATATCAAACAT
GACCGCACAGATAGACGTGGTTCAGTACATTTTGAATTGATGATTGATGAAGTACCAAAG
AAAAAAGGTGAAAATTAA
>g6841.t1 Gene=g6841 Length=325
MADKNKSDGDAYLNRPEKLGAWDGFKQFLWNSDTKQFMGRTSGSWLRILIFYIIFYIVLA
IFFVTMFFIFGSTLTKERPKYELKESLIGTNPGLGFRPMPPESNVESTLIWYQKDNPDNS
KYWVEEIDRFLEGFKGNSTDRVDCRNSPPEVGKICNVNLDAFKPCISKENYGYEQGRPCI
FLKLNKIYNWEPEYYNNSKQLAENMPKTLVKHIEDRQNKKKNTEVVWVSCEGENPADIEN
LGNSIDYYSLSGEQGFLGNYFPFLSTKGYLQPLVAVQFKSVKPGVLINIECKAWAKNIKH
DRTDRRGSVHFELMIDEVPKKKGEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6841.t1 | Gene3D | G3DSA:2.60.40.1660 | Na | 17 | 317 | 5.5E-101 |
| 2 | g6841.t1 | PANTHER | PTHR11523:SF46 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 | 11 | 316 | 4.2E-102 |
| 3 | g6841.t1 | PANTHER | PTHR11523 | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT | 11 | 316 | 4.2E-102 |
| 1 | g6841.t1 | Pfam | PF00287 | Sodium / potassium ATPase beta chain | 20 | 311 | 4.0E-79 |
| 8 | g6841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 44 | - |
| 9 | g6841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 70 | - |
| 7 | g6841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 71 | 325 | - |
| 5 | g6841.t1 | ProSitePatterns | PS00390 | Sodium and potassium ATPases beta subunits signature 1. | 25 | 45 | - |
| 4 | g6841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 70 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006813 | potassium ion transport | BP |
| GO:0005890 | sodium:potassium-exchanging ATPase complex | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K01540 (sodium/potassium-transporting ATPase subunit beta)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed