Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein escargot.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6846 g6846.t1 TSS g6846.t1 19116151 19116151
chr_2 g6846 g6846.t1 isoform g6846.t1 19116449 19117996
chr_2 g6846 g6846.t1 exon g6846.t1.exon1 19116449 19116509
chr_2 g6846 g6846.t1 cds g6846.t1.CDS1 19116449 19116509
chr_2 g6846 g6846.t1 exon g6846.t1.exon2 19116604 19117689
chr_2 g6846 g6846.t1 cds g6846.t1.CDS2 19116604 19117689
chr_2 g6846 g6846.t1 exon g6846.t1.exon3 19117755 19117996
chr_2 g6846 g6846.t1 cds g6846.t1.CDS3 19117755 19117996
chr_2 g6846 g6846.t1 TTS g6846.t1 19118119 19118119

Sequences

>g6846.t1 Gene=g6846 Length=1389
ATGCAAAAAAATTACAGTCATTGTCCGCTTAAAAAGCGTCCAGTCTTTATCGTCAAAGAA
GAATCAGATTCAGAAATGGAACCAGAAAATTTGAGCACAAAACCACAAGATTTACTTCTT
CGTACTGAAAAATTACAAGCAAAATCACTAAAAATGGAAAATGAGACGAAAAAAATTATT
GAAGAAATCAGACTCGTTTCGCCAAAGTCACCAGCAGTAGCATCAGAACCAGTGTATGAA
TATCCCAAATCACCAATTCCAACACATAAAACAAAGTCAGAAATTTCACCAGCTTCATCA
CCTTCAATGGAACCATTGAATTTTTCAAATCCTTCATCATGGCATAAGCCAGTGACAACT
TCACCCAATCCATACCATAATTACATCGCTTTTCCTGGATTCCCATATCCACCAGCAGAG
ACTTATAGTCGCCTCTATCATCATCCAATCTCACCCGTTCGTGATTCTTCACTTTCACCA
CCCTCATACATATCAGCTCGTAATATTAGAGATTCTTCAGTTTCACCACCAGCACCAGTT
TTTATTCAACCATATGCCACATCAGATTATCGTAGAAATGTTAAATCAGAAAATTATAGC
CAACACCGTTATATGCCATATCAATTAAATCATCATCACCATCATCACAATTTATTACCA
GTCGATCAGTCTTCATTATCGCCAACATCAAGTCATGCATCGTACAATTCTTTCGCATCA
TCTTCAAATGCATCAATGCGATCCATTTCACCACCAACAACGCCATCACATGTTGAAGAA
ATTCCAACAAATTATTCGATCTCAGTGCTGATGGAAAAATCAACTTCAAATTCAAATATT
CAAAAAGCTGTAAAAATGGAAAAGAGCGAAAAATCAACTGCACCACCACGATATCAATGT
CCTGATTGTGGTAAAAGTTATTCAACTTATTCTGGATTATCAAAGCATCAGCAATTCCAT
TGTGCTGCTAATGAAAATAATCAAGCACAGAAAACAGTGACATGTAATGAATGTGGAAAA
GTTTATGCCTCAACAGGAGCTCTAAAAATGCACATCAGAACTCACACTTTACCTTGCAAA
TGTCATCTTTGTGGCAAAGCATTTTCACGACCATGGTTATTGCAGGGACATATCAGAACA
CATACAGGTGAAAAACCATTCCAATGTCAATTCTGCCATCGAGCATTTGCTGATCGTTCA
AATTTAAGAGCACATTTGCAAACTCATTCGGATGTCAAAAAATATTCATGTACAACATGC
AGTAAAACTTTTTCGCGCATGTCATTATTAACAAAACACAATGATAGTGGATGTCCTGGA
TTACAAATGCAGCAAGGAGACAACTTTTCAAATCAAATTGTGCCTAACACAAATATTCAA
GTGTACTAA

>g6846.t1 Gene=g6846 Length=462
MQKNYSHCPLKKRPVFIVKEESDSEMEPENLSTKPQDLLLRTEKLQAKSLKMENETKKII
EEIRLVSPKSPAVASEPVYEYPKSPIPTHKTKSEISPASSPSMEPLNFSNPSSWHKPVTT
SPNPYHNYIAFPGFPYPPAETYSRLYHHPISPVRDSSLSPPSYISARNIRDSSVSPPAPV
FIQPYATSDYRRNVKSENYSQHRYMPYQLNHHHHHHNLLPVDQSSLSPTSSHASYNSFAS
SSNASMRSISPPTTPSHVEEIPTNYSISVLMEKSTSNSNIQKAVKMEKSEKSTAPPRYQC
PDCGKSYSTYSGLSKHQQFHCAANENNQAQKTVTCNECGKVYASTGALKMHIRTHTLPCK
CHLCGKAFSRPWLLQGHIRTHTGEKPFQCQFCHRAFADRSNLRAHLQTHSDVKKYSCTTC
SKTFSRMSLLTKHNDSGCPGLQMQQGDNFSNQIVPNTNIQVY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g6846.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 295 323 1.9E-6
14 g6846.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 331 356 2.3E-6
11 g6846.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 358 383 1.4E-10
12 g6846.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 384 407 2.4E-12
15 g6846.t1 Gene3D G3DSA:3.30.160.60 Classic Zinc Finger 408 436 1.2E-6
25 g6846.t1 MobiDBLite mobidb-lite consensus disorder prediction 224 259 -
6 g6846.t1 PANTHER PTHR24377:SF772 PROTEIN ESCARGOT 229 442 6.5E-90
7 g6846.t1 PANTHER PTHR24377 IP01015P-RELATED 229 442 6.5E-90
1 g6846.t1 Pfam PF00096 Zinc finger, C2H2 type 298 320 1.8E-5
4 g6846.t1 Pfam PF00096 Zinc finger, C2H2 type 334 355 1.7E-4
5 g6846.t1 Pfam PF00096 Zinc finger, C2H2 type 360 381 2.4E-5
3 g6846.t1 Pfam PF00096 Zinc finger, C2H2 type 387 409 8.7E-5
2 g6846.t1 Pfam PF00096 Zinc finger, C2H2 type 415 433 0.0022
17 g6846.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 300 320 -
19 g6846.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 335 355 -
16 g6846.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 359 381 -
18 g6846.t1 ProSitePatterns PS00028 Zinc finger C2H2 type domain signature. 389 409 -
30 g6846.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 298 325 12.424
29 g6846.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 333 356 11.344
27 g6846.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 359 386 14.898
26 g6846.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 387 414 12.778
28 g6846.t1 ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile. 415 433 9.598
20 g6846.t1 SMART SM00355 c2h2final6 298 320 0.0011
24 g6846.t1 SMART SM00355 c2h2final6 333 355 0.0021
21 g6846.t1 SMART SM00355 c2h2final6 359 381 0.015
23 g6846.t1 SMART SM00355 c2h2final6 387 409 6.3E-4
22 g6846.t1 SMART SM00355 c2h2final6 415 435 50.0
8 g6846.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 298 355 5.66E-11
10 g6846.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 358 409 8.1E-16
9 g6846.t1 SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 399 433 4.94E-8

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values