General information for g6899.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Guanine nucleotide-binding protein subunit beta-like protein.
Parent gene
- The parent gene g6899 is located on chr_2: 19757258..19758555 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6899 | g6899.t17 | TSS | g6899.t17 | 19756988 | 19756988 |
| chr_2 | g6899 | g6899.t17 | isoform | g6899.t17 | 19757065 | 19758475 |
| chr_2 | g6899 | g6899.t17 | exon | g6899.t17.exon1 | 19757065 | 19757173 |
| chr_2 | g6899 | g6899.t17 | cds | g6899.t17.CDS1 | 19757065 | 19757173 |
| chr_2 | g6899 | g6899.t17 | exon | g6899.t17.exon2 | 19757245 | 19757398 |
| chr_2 | g6899 | g6899.t17 | cds | g6899.t17.CDS2 | 19757245 | 19757398 |
| chr_2 | g6899 | g6899.t17 | exon | g6899.t17.exon3 | 19757814 | 19758475 |
| chr_2 | g6899 | g6899.t17 | cds | g6899.t17.CDS3 | 19757814 | 19757859 |
| chr_2 | g6899 | g6899.t17 | TTS | g6899.t17 | 19758558 | 19758558 |
Sequences
>g6899.t17 Gene=g6899 Length=925
ATGACCGAAACTTTGCAATTAAAAGGAACTCTTATCGGCCATTCAGGATGGGTAACTCAA
ATTGCTACTAATCCCAAATATCCTGATATGATTTTGTCATCGTCTCGAGACAAGACTTTG
ATTGTATGGCGTTTATTGCGTGAAGCTAATAGCTACGGTATTCCTCAAAAGCGTTTGTAT
GGACACAGCCATTTTATCAGTGACGTTGTTCTCTCATCTGACGGAAATTATGCTCTTTCT
GGATCATGGGACAAGACTTTGAGCGTGAATAATTTAAATATTACAGGATGTGCTCTCAGT
TGCTTTTAGCGCTGACAATCGTCAAATCGTTTCTGGCTCACGCGATAAGACTATTAAATT
GTGGAATACATTAGCCGAGTGCAAATACACCATTCAAGAAGATGGCCACTCTGACTGGGT
CTCATGCGTTCGTTTCTCACCAAATCAAGTAAATCCAATCATTGTTTCTGCTGGTTGGGA
TAAAACTGTTAAGGTCTGGAACTTGGCAAACTGCAAATTGAAGTTGAACCATTACGGTCA
CAATGGATACTTGAATACTGTCACTGTTTCACCTGATGGTTCATTGTGCACATCAGGCGG
TAAGGACTACAAGGCTTTGTTGTGGGATTTGAATGACGGCAAGCACTTGCACACACTTGA
ACATAACGACATCATCAATGCCTTATGCTTCTCACCAAACCGCTACTGGTTGTGCGTTGC
TTACGGATCATCAATCAAGATTTGGGATTTGGCATGCAAGAAAATGGTTGAAGAATTGCG
TCCAGGTGTCTCGACAAACGATTCATCAAAGGCTGATCCACCACAGTGCTTGTCACTTGC
TTGGTCAACTGATGGACAAACTTTGTTTGCCGGCTACAGCGATAACAAGATTCGCGTTTG
GCAAGTTTCAGTTACTGCTCGTTAA
>g6899.t17 Gene=g6899 Length=102
MTETLQLKGTLIGHSGWVTQIATNPKYPDMILSSSRDKTLIVWRLLREANSYGIPQKRLY
GHSHFISDVVLSSDGNYALSGSWDKTLSVNNLNITGCALSCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6899.t17 | Gene3D | G3DSA:2.130.10.10 | - | 8 | 100 | 0.0000000 |
| 3 | g6899.t17 | PANTHER | PTHR19868:SF0 | RECEPTOR OF ACTIVATED PROTEIN C KINASE 1 | 1 | 94 | 0.0000000 |
| 4 | g6899.t17 | PANTHER | PTHR19868 | RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 | 1 | 94 | 0.0000000 |
| 1 | g6899.t17 | Pfam | PF00400 | WD domain, G-beta repeat | 6 | 43 | 0.0001800 |
| 2 | g6899.t17 | Pfam | PF00400 | WD domain, G-beta repeat | 55 | 89 | 0.0000610 |
| 9 | g6899.t17 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 11 | 100 | 13.6060000 |
| 10 | g6899.t17 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 45 | 10.7420000 |
| 6 | g6899.t17 | SMART | SM00320 | WD40_4 | 4 | 44 | 0.0000007 |
| 7 | g6899.t17 | SMART | SM00320 | WD40_4 | 52 | 91 | 0.0036000 |
| 5 | g6899.t17 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 93 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
