General information for g6899.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Guanine nucleotide-binding protein subunit beta-like protein.
Parent gene
- The parent gene g6899 is located on chr_2: 19757258..19758555 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6899 | g6899.t22 | TSS | g6899.t22 | 19756988 | 19756988 |
| chr_2 | g6899 | g6899.t22 | isoform | g6899.t22 | 19757065 | 19758475 |
| chr_2 | g6899 | g6899.t22 | exon | g6899.t22.exon1 | 19757065 | 19757173 |
| chr_2 | g6899 | g6899.t22 | cds | g6899.t22.CDS1 | 19757065 | 19757173 |
| chr_2 | g6899 | g6899.t22 | exon | g6899.t22.exon2 | 19757245 | 19757398 |
| chr_2 | g6899 | g6899.t22 | cds | g6899.t22.CDS2 | 19757245 | 19757398 |
| chr_2 | g6899 | g6899.t22 | exon | g6899.t22.exon3 | 19757822 | 19758475 |
| chr_2 | g6899 | g6899.t22 | cds | g6899.t22.CDS3 | 19757822 | 19757924 |
| chr_2 | g6899 | g6899.t22 | TTS | g6899.t22 | 19758558 | 19758558 |
Sequences
>g6899.t22 Gene=g6899 Length=917
ATGACCGAAACTTTGCAATTAAAAGGAACTCTTATCGGCCATTCAGGATGGGTAACTCAA
ATTGCTACTAATCCCAAATATCCTGATATGATTTTGTCATCGTCTCGAGACAAGACTTTG
ATTGTATGGCGTTTATTGCGTGAAGCTAATAGCTACGGTATTCCTCAAAAGCGTTTGTAT
GGACACAGCCATTTTATCAGTGACGTTGTTCTCTCATCTGACGGAAATTATGCTCTTTCT
GGATCATGGGACAAGACTTTGAGATTTAAATATTACAGGATGTGCTCTCAGTTGCTTTTA
GCGCTGACAATCGTCAAATCGTTTCTGGCTCACGCGATAAGACTATTAAATTGTGGAATA
CATTAGCCGAGTGCAAATACACCATTCAAGAAGATGGCCACTCTGACTGGGTCTCATGCG
TTCGTTTCTCACCAAATCAAGTAAATCCAATCATTGTTTCTGCTGGTTGGGATAAAACTG
TTAAGGTCTGGAACTTGGCAAACTGCAAATTGAAGTTGAACCATTACGGTCACAATGGAT
ACTTGAATACTGTCACTGTTTCACCTGATGGTTCATTGTGCACATCAGGCGGTAAGGACT
ACAAGGCTTTGTTGTGGGATTTGAATGACGGCAAGCACTTGCACACACTTGAACATAACG
ACATCATCAATGCCTTATGCTTCTCACCAAACCGCTACTGGTTGTGCGTTGCTTACGGAT
CATCAATCAAGATTTGGGATTTGGCATGCAAGAAAATGGTTGAAGAATTGCGTCCAGGTG
TCTCGACAAACGATTCATCAAAGGCTGATCCACCACAGTGCTTGTCACTTGCTTGGTCAA
CTGATGGACAAACTTTGTTTGCCGGCTACAGCGATAACAAGATTCGCGTTTGGCAAGTTT
CAGTTACTGCTCGTTAA
>g6899.t22 Gene=g6899 Length=121
MTETLQLKGTLIGHSGWVTQIATNPKYPDMILSSSRDKTLIVWRLLREANSYGIPQKRLY
GHSHFISDVVLSSDGNYALSGSWDKTLRFKYYRMCSQLLLALTIVKSFLAHAIRLLNCGI
H
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6899.t22 | Gene3D | G3DSA:2.130.10.10 | - | 8 | 108 | 5.3E-27 |
| 3 | g6899.t22 | PANTHER | PTHR19868:SF0 | RECEPTOR OF ACTIVATED PROTEIN C KINASE 1 | 1 | 89 | 1.6E-34 |
| 4 | g6899.t22 | PANTHER | PTHR19868 | RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 | 1 | 89 | 1.6E-34 |
| 1 | g6899.t22 | Pfam | PF00400 | WD domain, G-beta repeat | 6 | 43 | 2.6E-4 |
| 2 | g6899.t22 | Pfam | PF00400 | WD domain, G-beta repeat | 55 | 89 | 2.1E-5 |
| 12 | g6899.t22 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 97 | - |
| 14 | g6899.t22 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 116 | - |
| 13 | g6899.t22 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 117 | 121 | - |
| 9 | g6899.t22 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 11 | 100 | 13.132 |
| 11 | g6899.t22 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 45 | 10.742 |
| 10 | g6899.t22 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 59 | 89 | 8.637 |
| 6 | g6899.t22 | SMART | SM00320 | WD40_4 | 4 | 44 | 7.1E-7 |
| 7 | g6899.t22 | SMART | SM00320 | WD40_4 | 52 | 93 | 0.37 |
| 5 | g6899.t22 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 90 | 8.49E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
