General information for g6934.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Molybdenum cofactor biosynthesis protein 1.
Parent gene
- The parent gene g6934 is located on chr_2: 20042605..20043843 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6934 | g6934.t6 | isoform | g6934.t6 | 20040689 | 20042605 |
| chr_2 | g6934 | g6934.t6 | exon | g6934.t6.exon1 | 20040689 | 20040850 |
| chr_2 | g6934 | g6934.t6 | exon | g6934.t6.exon2 | 20040908 | 20041280 |
| chr_2 | g6934 | g6934.t6 | exon | g6934.t6.exon3 | 20041507 | 20041844 |
| chr_2 | g6934 | g6934.t6 | cds | g6934.t6.CDS1 | 20041541 | 20041844 |
| chr_2 | g6934 | g6934.t6 | exon | g6934.t6.exon4 | 20041912 | 20042006 |
| chr_2 | g6934 | g6934.t6 | cds | g6934.t6.CDS2 | 20041912 | 20041967 |
| chr_2 | g6934 | g6934.t6 | exon | g6934.t6.exon5 | 20042067 | 20042605 |
| chr_2 | g6934 | g6934.t6 | TSS | g6934.t6 | NA | NA |
| chr_2 | g6934 | g6934.t6 | TTS | g6934.t6 | NA | NA |
Sequences
>g6934.t6 Gene=g6934 Length=1507
ATGTATCTAAGAAAGATTTATTCAAAGAATGTCATTGAATGCTTAAATTCATCTTCATAT
ATCAATCATCTGCGAAATTTGTCATCAAAATCATTAAAACCAAATGTTGAATTTATCACT
GATAATGAAAAAATTACAACGCAAATCGAACAACGTAGAAATAAGCAACAAGTTTCACCA
TTAATCGATTCTTTTGGAAGATTTCATTCATATTTGAGAATATCATTAACTGAAAAGTGC
AATCTGAGATGTCAATATTGCATGCCTGAAGAAGGTGTGCCATTGTCTCCCAAATCACAT
CTTTTGACAACTGATGAAATTATTTACATATCAAAACTATTTATTGATCAAGGTGTAAGA
AAAATTCGTTTAACAGGAGGTGAGCCCACCATAAGAAAGGACTTGGTTGAAATCATAGCA
AGACTTAAAGAAATTCCACTACTTGAGAATATTAGCATTACTACAAATGGACTAGTGTTA
ACAAGAAATCTTGTCAGTTATCAACGTGCTGGACTTGATTCACTTAATATTTCTCGTGGG
AGACTGAAAAACTTTTATCATTCCGTGACATGTTGAATTTAATTCAACAAAAATATCCAA
CATTTGAAGCCCTTGAGAACAAACCAAATGATACTTCAAAAGCTTTTAGAGTTCCTGGCT
ATGAAGGTCAAGTTGGTTTCATTACTTCAATGACAGAACATTTCTGTGGTTCATGTAACC
GCTTGAGAATTACTGCAGATGGAAATTTAAAAGTTTGTTTATTCGGAAACAAAGAGGTAT
CATTAAGAGATGCAATTCGTAATGGATGCTCTGAAGATGATTTGATTGCATTGATTGGTG
CATCAGTTCTAAGAAAAAAGAAACAACATGCAGGCATGTTAAATCTAAAATCTATGGAAA
ATCGTCCAATGATTTTAATTGGAGGATAATGCCATGAAAAAATAATATTCCATTTGCTAT
TTTTTATGAAAATATTTTATTATTTAATCAACAAAACTATCCATTTCGATTTCAAGCGAG
AAATTATTCCTCAAAAACTGACCTTACACATGTCGATGAACAAGGAAAGGCAAAAATGGT
AAATGTCATTGATAAACCACATACAAAGAGAAAAGCAATTGCTAGAGGATTCGTTAATGT
TGGTGCAGAAATTACAAAACTGATTTCTAATAATCTTATGAAGAAAGGAGATGTTTTGAC
AATCGCACAACTAGCCGGCATAATGGGTGCTAAACAAACTTCAAATTTAATACCTCTTAC
TCATCCAATTCCAATTTCATCAATAAAAATTGAAGTTAAATTGAATGAAGAGAAACAGAG
AGTTGAAATAACATCAGCAATTGAATGTTGTTGGAATACAGGTATAGAAATTGAAGCATT
AACTGCCGTTGCGATTGCTTCTCTTACCATATATGACATGTGCAAGGCTGTTTCGCACGA
TATCACAATTACTGACATTAAATTATTGGAAAAATCCGGTGGTAAAAATTATTTTAAGAG
AACATAA
>g6934.t6 Gene=g6934 Length=119
MLNLIQQKYPTFEALENKPNDTSKAFRVPGYEGQVGFITSMTEHFCGSCNRLRITADGNL
KVCLFGNKEVSLRDAIRNGCSEDDLIALIGASVLRKKKQHAGMLNLKSMENRPMILIGG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6934.t6 | Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 119 | 0 |
| 2 | g6934.t6 | PANTHER | PTHR22960:SF26 | MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN 1 | 1 | 109 | 0 |
| 3 | g6934.t6 | PANTHER | PTHR22960 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A | 1 | 109 | 0 |
| 1 | g6934.t6 | Pfam | PF06463 | Molybdenum Cofactor Synthesis C | 1 | 101 | 0 |
| 4 | g6934.t6 | SUPERFAMILY | SSF102114 | Radical SAM enzymes | 6 | 71 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | BP |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0019008 | molybdopterin synthase complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed