General information for g6934.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Molybdenum cofactor biosynthesis protein 1.
Parent gene
- The parent gene g6934 is located on chr_2: 20042605..20043843 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6934 | g6934.t8 | isoform | g6934.t8 | 20041840 | 20042605 |
| chr_2 | g6934 | g6934.t8 | exon | g6934.t8.exon1 | 20041840 | 20041844 |
| chr_2 | g6934 | g6934.t8 | exon | g6934.t8.exon2 | 20042067 | 20042605 |
| chr_2 | g6934 | g6934.t8 | cds | g6934.t8.CDS1 | 20042174 | 20042605 |
| chr_2 | g6934 | g6934.t8 | TSS | g6934.t8 | NA | NA |
| chr_2 | g6934 | g6934.t8 | TTS | g6934.t8 | NA | NA |
Sequences
>g6934.t8 Gene=g6934 Length=544
TGCAGAAAATATTTTATTATTTAATCAACAAAACTATCCATTTCGATTTCAAGCGAGAAA
TTATTCCTCAAAAACTGACCTTACACATGTCGATGAACAAGGAAAGGCAAAAATGGTAAA
TGTCATTGATAAACCACATACAAAGAGAAAAGCAATTGCTAGAGGATTCGTTAATGTTGG
TGCAGAAATTACAAAACTGATTTCTAATAATCTTATGAAGAAAGGAGATGTTTTGACAAT
CGCACAACTAGCCGGCATAATGGGTGCTAAACAAACTTCAAATTTAATACCTCTTACTCA
TCCAATTCCAATTTCATCAATAAAAATTGAAGTTAAATTGAATGAAGAGAAACAGAGAGT
TGAAATAACATCAGCAATTGAATGTTGTTGGAATACAGGTATAGAAATTGAAGCATTAAC
TGCCGTTGCGATTGCTTCTCTTACCATATATGACATGTGCAAGGCTGTTTCGCACGATAT
CACAATTACTGACATTAAATTATTGGAAAAATCCGGTGGTAAAAATTATTTTAAGAGAAC
ATAA
>g6934.t8 Gene=g6934 Length=143
MVNVIDKPHTKRKAIARGFVNVGAEITKLISNNLMKKGDVLTIAQLAGIMGAKQTSNLIP
LTHPIPISSIKIEVKLNEEKQRVEITSAIECCWNTGIEIEALTAVAIASLTIYDMCKAVS
HDITITDIKLLEKSGGKNYFKRT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6934.t8 | CDD | cd01420 | MoaC_PE | 1 | 138 | 0 |
| 5 | g6934.t8 | Gene3D | G3DSA:3.30.70.640 | - | 1 | 143 | 0 |
| 2 | g6934.t8 | PANTHER | PTHR22960:SF24 | CYCLIC PYRANOPTERIN MONOPHOSPHATE SYNTHASE, MITOCHONDRIAL | 1 | 138 | 0 |
| 3 | g6934.t8 | PANTHER | PTHR22960 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A | 1 | 138 | 0 |
| 1 | g6934.t8 | Pfam | PF01967 | MoaC family | 1 | 136 | 0 |
| 4 | g6934.t8 | SUPERFAMILY | SSF55040 | Molybdenum cofactor biosynthesis protein C, MoaC | 1 | 138 | 0 |
| 6 | g6934.t8 | TIGRFAM | TIGR00581 | moaC: molybdenum cofactor biosynthesis protein C | 1 | 138 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K03637 (cyclic pyranopterin monophosphate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
