Gene loci information

Transcript annotation

  • This transcript has been annotated as Triosephosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6936 g6936.t52 isoform g6936.t52 20044092 20045161
chr_2 g6936 g6936.t52 exon g6936.t52.exon1 20044092 20044117
chr_2 g6936 g6936.t52 exon g6936.t52.exon2 20044235 20044376
chr_2 g6936 g6936.t52 exon g6936.t52.exon3 20044463 20044540
chr_2 g6936 g6936.t52 cds g6936.t52.CDS1 20044474 20044540
chr_2 g6936 g6936.t52 exon g6936.t52.exon4 20044605 20045161
chr_2 g6936 g6936.t52 cds g6936.t52.CDS2 20044605 20045161
chr_2 g6936 g6936.t52 TTS g6936.t52 20045299 20045299
chr_2 g6936 g6936.t52 TSS g6936.t52 NA NA

Sequences

>g6936.t52 Gene=g6936 Length=803
CAACAGATTTTCGCAAATTTCATCCGTTGATTAAATAGCAAAAAAGACAGCAACAAAATG
GGTCGCAAATTTTGTGTTGGTGGAAATTGGAAAATGAATGGATCTAAGGATTCTATCACA
GAATTGGCCAAAATCCTTTCTGCTGGACCATTAGATCCAAATACTGAAGTCGTTGTTGGA
TGCCCAAGCGTTTATATCTCATTCGCTCGAGGACTTCTTCCTTCCTCAATTGGTGTTGCT
GGCCAGAGAATTGCTATAAAGTCAAATCAGGAGCTTTCACAGGAGAAATCGCACCATCAA
TGTTAAAAGATGTTGGTGCTGATTGGGTTATTCTTGGACACTCAGAGAGACGTGCAATTT
TCGGCGAAAGTGATGAATTAATCGCAGATAAAGTTGAATTTGCCCTTTCAGAAGGATTGA
AAGTCATTGCTTGCATTGGTGAAACTCTTCAAGAACGTGAGGCTGGTCAAACTGAAGCAG
TATGCTTCCGTCAAACGAAGGCAATAGCTTCTGTTGTCAAAGACTGGTCAAATGTTGTTA
TCGCTTATGAACCGGTTTGGGCAATTGGAACTGGCAAAACTGCAACTCCAGCTCAAGCCC
AAGAGGTTCATGCTGCTCTCCGTAAATGGTTCGCCGAGAACGTTTCTCAAGCCGTTTCTG
ATTCAATTCGTATTCAATATGGTGGCTCAGTTACTGCTGCTAATGCTCGTGAATTAGCTT
CACAACCAGATATCGATGGATTTTTAGTTGGAGGTGCATCATTAAAACCCGAATTCGTAC
AAATTGTCAATGCTAGGCAGTAA

>g6936.t52 Gene=g6936 Length=207
MPKRLYLIRSRTSSFLNWCCWPENCYKVKSGAFTGEIAPSMLKDVGADWVILGHSERRAI
FGESDELIADKVEFALSEGLKVIACIGETLQEREAGQTEAVCFRQTKAIASVVKDWSNVV
IAYEPVWAIGTGKTATPAQAQEVHAALRKWFAENVSQAVSDSIRIQYGGSVTAANARELA
SQPDIDGFLVGGASLKPEFVQIVNARQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6936.t52 CDD cd00311 TIM 24 204 3.3826E-113
5 g6936.t52 Gene3D G3DSA:3.20.20.70 Aldolase class I 2 207 4.5E-88
3 g6936.t52 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 1 205 48.153782
2 g6936.t52 PANTHER PTHR21139 TRIOSEPHOSPHATE ISOMERASE 23 205 3.5E-93
1 g6936.t52 Pfam PF00121 Triosephosphate isomerase 22 203 7.0E-78
7 g6936.t52 ProSitePatterns PS00171 Triosephosphate isomerase active site. 122 132 -
9 g6936.t52 ProSiteProfiles PS51440 Triosephosphate isomerase (TIM) family profile. 1 205 70.931
4 g6936.t52 SUPERFAMILY SSF51351 Triosephosphate isomerase (TIM) 4 205 7.46E-81
8 g6936.t52 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 23 198 3.7E-65

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006096 glycolytic process BP
GO:0004807 triose-phosphate isomerase activity MF
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed