Gene loci information

Transcript annotation

  • This transcript has been annotated as Triosephosphate isomerase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6936 g6936.t79 TSS g6936.t79 20044234 20044234
chr_2 g6936 g6936.t79 isoform g6936.t79 20044266 20045161
chr_2 g6936 g6936.t79 exon g6936.t79.exon1 20044266 20044393
chr_2 g6936 g6936.t79 cds g6936.t79.CDS1 20044266 20044393
chr_2 g6936 g6936.t79 exon g6936.t79.exon2 20044483 20044540
chr_2 g6936 g6936.t79 cds g6936.t79.CDS2 20044483 20044540
chr_2 g6936 g6936.t79 exon g6936.t79.exon3 20044607 20045161
chr_2 g6936 g6936.t79 cds g6936.t79.CDS3 20044607 20045161
chr_2 g6936 g6936.t79 TTS g6936.t79 20045299 20045299

Sequences

>g6936.t79 Gene=g6936 Length=741
ATGGGTCGCAAATTTTGTGTTGGTGGAAATTGGAAAATGAATGGATCTAAGGATTCTATC
ACAGAATTGGCCAAAATCCTTTCTGCTGGACCATTAGATCCAAATACTGAAGTGAGTTTC
TTTAAGCTCGTTTATATCTCATTCGCTCGAGGACTTCTTCCTTCCTCAATTGGTGTTGCT
GGCCAGAATTGCTATAAAGTCAAATCAGGAGCTTTCACAGGAGAAATCGCACCATCAATG
TTAAAAGATGTTGGTGCTGATTGGGTTATTCTTGGACACTCAGAGAGACGTGCAATTTTC
GGCGAAAGTGATGAATTAATCGCAGATAAAGTTGAATTTGCCCTTTCAGAAGGATTGAAA
GTCATTGCTTGCATTGGTGAAACTCTTCAAGAACGTGAGGCTGGTCAAACTGAAGCAGTA
TGCTTCCGTCAAACGAAGGCAATAGCTTCTGTTGTCAAAGACTGGTCAAATGTTGTTATC
GCTTATGAACCGGTTTGGGCAATTGGAACTGGCAAAACTGCAACTCCAGCTCAAGCCCAA
GAGGTTCATGCTGCTCTCCGTAAATGGTTCGCCGAGAACGTTTCTCAAGCCGTTTCTGAT
TCAATTCGTATTCAATATGGTGGCTCAGTTACTGCTGCTAATGCTCGTGAATTAGCTTCA
CAACCAGATATCGATGGATTTTTAGTTGGAGGTGCATCATTAAAACCCGAATTCGTACAA
ATTGTCAATGCTAGGCAGTAA

>g6936.t79 Gene=g6936 Length=246
MGRKFCVGGNWKMNGSKDSITELAKILSAGPLDPNTEVSFFKLVYISFARGLLPSSIGVA
GQNCYKVKSGAFTGEIAPSMLKDVGADWVILGHSERRAIFGESDELIADKVEFALSEGLK
VIACIGETLQEREAGQTEAVCFRQTKAIASVVKDWSNVVIAYEPVWAIGTGKTATPAQAQ
EVHAALRKWFAENVSQAVSDSIRIQYGGSVTAANARELASQPDIDGFLVGGASLKPEFVQ
IVNARQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g6936.t79 CDD cd00311 TIM 5 243 4.79864E-129
6 g6936.t79 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 246 1.5E-102
4 g6936.t79 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 3 244 57.794952
2 g6936.t79 PANTHER PTHR21139:SF17 TRIOSEPHOSPHATE ISOMERASE A 3 245 8.4E-111
3 g6936.t79 PANTHER PTHR21139 TRIOSEPHOSPHATE ISOMERASE 3 245 8.4E-111
1 g6936.t79 Pfam PF00121 Triosephosphate isomerase 6 242 1.7E-86
8 g6936.t79 ProSitePatterns PS00171 Triosephosphate isomerase active site. 161 171 -
10 g6936.t79 ProSiteProfiles PS51440 Triosephosphate isomerase (TIM) family profile. 4 244 80.201
5 g6936.t79 SUPERFAMILY SSF51351 Triosephosphate isomerase (TIM) 3 244 9.69E-93
9 g6936.t79 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 7 237 2.2E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006096 glycolytic process BP
GO:0004807 triose-phosphate isomerase activity MF
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed