General information for g6971.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6971 is located on chr_2: 20232593..20233719 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6971 | g6971.t4 | isoform | g6971.t4 | 20232593 | 20233719 |
| chr_2 | g6971 | g6971.t4 | exon | g6971.t4.exon1 | 20232593 | 20233719 |
| chr_2 | g6971 | g6971.t4 | cds | g6971.t4.CDS1 | 20232593 | 20233090 |
| chr_2 | g6971 | g6971.t4 | TSS | g6971.t4 | 20233719 | 20233719 |
| chr_2 | g6971 | g6971.t4 | TTS | g6971.t4 | NA | NA |
Sequences
>g6971.t4 Gene=g6971 Length=1127
AGTTCCATACGAGACTTCAATCCGTTATAATCATTTTCGATTAGTATTGCGGTTACTGTT
GACTGATTTTTCACACTTTTACTCTACTGGATAAATTTACCGAATTTTGGTAGAATATTT
TGTTTTTCAAAAGTTTTTGCCACGTATATATAGAAAGAAAATTTCCTTTGTCATCCTTTT
ATTTAAAGAAAGGAAAGAAAAAGTAAAAAATTGCGAAAAAAAATTCCGCAAAATAGCTTA
GTAAAATGTTTTTGAGTTTTCCCATTGTTCAATGTCAAGTGCACGAAGAGAAAAACAATC
TTAATTGACGATTTTGCGACAGTAAGTTGCAGTGTATGAACTAACGAACATATGATCAGT
GTTAATAGATTAATTAGAGGTCAATGTTACATTAATAGCATTGGCAACATCGCAATTGTA
CAGTTTTAAAAGTTTGTTGGAAAAACGTGACTTGTGTGTGAAATTTTTCTCAAAAAATTC
AAATTTCATTCAAATGCTGCAAAAAAACTGAGAAAATTATTGTTAATCAACCCACGCTTG
AAAAAAGTGAAAAATTGTTTCGGCTAAAGCGAAATTTTCCTCGCTCGCGAGAGAGCATCG
ATTAGTCAATTGTGCGACGAAATCGCGAGATGATGCACTTAAGACGATGCTCAGAATCAG
ATTTGTGTTTGAATAAATTACTTCAGCCAAGCAGCGCACAAACACCAGTATCTTCTTCGG
ATGGCGATAATGCAAGCGAAGCGCCGACTAAATCTGATCGCTTGCTCATCGAAATAGATG
AGAATACTGAAAATAGTCGCGATAATTATCTCTTACCAGTCACATCGCCAACTTCGAGTG
CAAGAATAATTCCCGCGTCTCGACCACCGCCTTCTGTAGCATCTTCGAGCGCACAGCGAA
AAATTAAATATCAACTCGAGAACGATAATTTGTTATTGTTTAATAAATTTTTTAATCGGA
CAAATTCAAATTATTCTCATCCAATATCTACACAGCGTCGATCAGGTTTGAGCTCAGGAC
TTATCATGTCACAAGTTGCTGACGAATTTCACACACCTAATTATCTCTCATGGAGGAAAT
TACAATTAAGTAGGGCTAAATTAAAAGCATCAAGTAAAACATCAGCG
>g6971.t4 Gene=g6971 Length=166
MMHLRRCSESDLCLNKLLQPSSAQTPVSSSDGDNASEAPTKSDRLLIEIDENTENSRDNY
LLPVTSPTSSARIIPASRPPPSVASSSAQRKIKYQLENDNLLLFNKFFNRTNSNYSHPIS
TQRRSGLSSGLIMSQVADEFHTPNYLSWRKLQLSRAKLKASSKTSA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6971.t4 | Gene3D | G3DSA:1.20.140.140 | - | 133 | 166 | 2.7E-9 |
| 1 | g6971.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 36 | - |
| 2 | g6971.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 44 | - |
| 3 | g6971.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 87 | - |
| 4 | g6971.t4 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
