General information for g7007.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aspartyl/asparaginyl beta-hydroxylase.
Parent gene
- The parent gene g7007 is located on chr_2: 20588347..20592436 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7007 | g7007.t13 | isoform | g7007.t13 | 20587699 | 20589043 |
| chr_2 | g7007 | g7007.t13 | exon | g7007.t13.exon1 | 20587699 | 20587999 |
| chr_2 | g7007 | g7007.t13 | exon | g7007.t13.exon2 | 20588058 | 20588284 |
| chr_2 | g7007 | g7007.t13 | exon | g7007.t13.exon3 | 20588345 | 20588918 |
| chr_2 | g7007 | g7007.t13 | cds | g7007.t13.CDS1 | 20588630 | 20588918 |
| chr_2 | g7007 | g7007.t13 | exon | g7007.t13.exon4 | 20588985 | 20589043 |
| chr_2 | g7007 | g7007.t13 | cds | g7007.t13.CDS2 | 20588985 | 20589043 |
| chr_2 | g7007 | g7007.t13 | TTS | g7007.t13 | 20589211 | 20589211 |
| chr_2 | g7007 | g7007.t13 | TSS | g7007.t13 | NA | NA |
Sequences
>g7007.t13 Gene=g7007 Length=1161
AGAATCCGGAAGTAAAAGATCTCTATGAGAAAGCAAAGTCATTAGATGCTACAGCAGAAA
GAGAAAAGAGCAATAAAATATTATTGGAGGCTATTGAAAAATATAAAGAACTTATCAATG
TTTATGGTGACAAAGTGAATGATACAATATTCAAAGAAATTGCTGAAAAATGTATCGAGC
GAATGAGATTCATGGGAAAACTTAAGCAAACTGTCGACATTCATTATAAATTAATACATC
GATTTGTTGAAAATCCGTCTTACAGGAATCAACTGGCCGTAACCTACTTATTGGGCAATC
GCAGCTAAACTTGTACTGCATGAAACGCTCTCTGAGTGGCGAAACAATGGATTTGCATTA
GTTCATTATGGCTATGTATTAAAAAATCTCGATCAAGACTACGAAAATGCAATTTTATAT
TTACGCGAAGGAATAGAAACTAACGATCCTGGTACACAAGATGGTAGATTTTATTACAAT
CTAGGTGATGCTCTCCAAAGACTTGGTAGACAGGAAGAGGCTTTAGAAGTTTATCGAAAA
GGTGCATCAATAGGATTATTTCTATCTGAATACCAAAGATCTCTCTACAATATAGACAGA
CTGAAATCAAAGCCATTTTGGACAAAAGTTGAAACTACTTATAAAGATAATTTAGTAGAA
ATTCAGAAATATTGGCAAATTATAAGAGATGAAGGACTGAAATTATTATCAAATGATGGT
ATATTTATAAATGAACAAGAAAATCTCAAAGACACCGGAGATTGGAAGCAATTTGAATTA
TTTGCACGTGGTGCAGCTACGAAATATTGTCACATGGCCCCAATCACATGTAAAATAATT
AATGGTTTTAAAGCAGCTTCCAGTTGTAAGAGAGGTCAAGTTAAATTCAGTGTGCTTCAT
CCAAATACTCATATACATAGTCATTGTGGCCCAACAAACTGTCGTATAAGAGCGCATTTA
GGACTTCAAGTTCCTGAAAAAACGTTCATAAGAGTGGCTAATGAAACTCGTTCGTGGAAA
GATGGTGAATGGTTGATTTTCGATGATTCTTTCGAACATGAAGTTTGGCATAACGGAACG
AGCATTCGACTTGTTCTTATTGTTGATATGTATCATCCTGATTTGACTGAAGATGAAAAA
CGAAGCTTAAGCCCTATTTAA
>g7007.t13 Gene=g7007 Length=115
MAPITCKIINGFKAASSCKRGQVKFSVLHPNTHIHSHCGPTNCRIRAHLGLQVPEKTFIR
VANETRSWKDGEWLIFDDSFEHEVWHNGTSIRLVLIVDMYHPDLTEDEKRSLSPI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7007.t13 | Gene3D | G3DSA:2.60.120.330 | - | 1 | 114 | 0 |
| 2 | g7007.t13 | PANTHER | PTHR12366 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE | 2 | 115 | 0 |
| 3 | g7007.t13 | PANTHER | PTHR12366:SF29 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE | 2 | 115 | 0 |
| 1 | g7007.t13 | Pfam | PF05118 | Aspartyl/Asparaginyl beta-hydroxylase | 2 | 102 | 0 |
| 4 | g7007.t13 | SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 18 | 103 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0018193 | peptidyl-amino acid modification | BP |
| GO:0042264 | peptidyl-aspartic acid hydroxylation | BP |
| GO:0004597 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
