General information for g7007.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7007 is located on chr_2: 20588347..20592436 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7007 | g7007.t4 | isoform | g7007.t4 | 20582367 | 20584669 |
| chr_2 | g7007 | g7007.t4 | exon | g7007.t4.exon1 | 20582367 | 20582940 |
| chr_2 | g7007 | g7007.t4 | exon | g7007.t4.exon2 | 20583157 | 20583460 |
| chr_2 | g7007 | g7007.t4 | exon | g7007.t4.exon3 | 20583965 | 20584157 |
| chr_2 | g7007 | g7007.t4 | cds | g7007.t4.CDS1 | 20584034 | 20584157 |
| chr_2 | g7007 | g7007.t4 | exon | g7007.t4.exon4 | 20584215 | 20584669 |
| chr_2 | g7007 | g7007.t4 | cds | g7007.t4.CDS2 | 20584215 | 20584669 |
| chr_2 | g7007 | g7007.t4 | TTS | g7007.t4 | 20585135 | 20585135 |
| chr_2 | g7007 | g7007.t4 | TSS | g7007.t4 | NA | NA |
Sequences
>g7007.t4 Gene=g7007 Length=1526
TAGTGCAGATTCAAATAAATTTTTATGTTTTATGTTTTTTCTTTTGCTATTATGGCTGCA
GCAAAAAAATTGAAGTGTTCTCAAAATATATTTATATTTTATTCTTTGCAAAGTTTTAAC
ACATTTACTGTTTTGAAATTCAATTGCAAACTTTATTAATTATACTTAAACACTGTTTTA
ATTGCTTTTATAATATTAAAGATACTATTTATTCAGTTTTTTGAATATATTCAAAGAAAT
CAAATGTATTTGATGTTGATTTCTAAAATTATAATTTCAAACACTTTGTCAATTGACATA
ATTTTACAAAAATTTTTTAAAATAATTATTTCAGTAATAATTATAAAATGTAAGTTTCTT
AAATTAAATCCATTTCATAGATATTTGATTAATATTAAATTAAGCGAATATAATTTAAAT
GCGCTATAACAAGTTTCCGTATTGACATGATATCTTGTTTTTGGGGGTCGCTCACTTAAT
AGAAGTTTGGTAGAATTTCATAAATTCGAATAACAAACAAATAATATAAAAACACAATTA
TTGAATGAAATTCGATTAATGAATAAGAATAAAAAATCTCTTATTTCGTTGGAAACAAAT
AACCAAAAAAAAAAATATTTATGCACACAAAGTCAGCTGTTTTATAATGAGAAATGATTT
TTCAACAAGTATAAATAGACTTAGAGCACACAATATTTTCAGAGTGCGGAAGTCTTCGAA
AAACAGCAACAGTTGAAAGAATCAAAAAATTGTCGCTCATAACATATTATCCAAAAATAG
ATGAATTAAGTTGCTATTGAACTTTTGAAAGTTATTAACGATGTCGGGAGACGTACAAAC
ACGACAAAGGCGAAAGGAGAAGAAAAAACCAAAACGCGGAAGAAATTTCAACAGTTCCTG
GAGTTGACACATCAAAATTCAATGAAGCCGAAAAAAAGACTGTGCAAATGCACATTCAAG
AAAGTGATCATGGTGCAGGCATTTGCGCAAAGATCATTTTTTTCTCTTTAATGGCAATTT
TATTGGGACTTGTGACTCTTATTGTTCTTGAAAATCGCGGCGGATCTGATGTTGATACAC
CATTATCAGAATCTCGGTTCTCTGAATATTTAACAGGATGGGTAGATGAGAATAGAGAAA
TAGATGATCATCATGTTGAACCGCATTTTGATATACATGATGATGATCCCGACGAAGAGA
CAACACATGTTTATCAGAAACCGGTTGTACCTGATGATGAACCGTTTCCAGAAGAAAGAG
ATAATTCAAATCCAGATGATGATCATGAAGAATTGAATGAAAATTTAAATAATGAATCTG
AAAATGATGAAGATGATGTCATATCAGAAAATCAAAATGAAATAGATCAACAAGACGAAG
AACAAGATGAAGATAACAATGAAAATGAAGTAAATGATGAACCATTAAGACAAGAAGAAG
AAGAAAATAACGAGAACGAAGCAGCTGATGATGATGAAAATGAAGTGCCAAATATGTTTG
ATGACAGTGCACCATTTGATGAGGAG
>g7007.t4 Gene=g7007 Length=193
MHIQESDHGAGICAKIIFFSLMAILLGLVTLIVLENRGGSDVDTPLSESRFSEYLTGWVD
ENREIDDHHVEPHFDIHDDDPDEETTHVYQKPVVPDDEPFPEERDNSNPDDDHEELNENL
NNESENDEDDVISENQNEIDQQDEEQDEDNNENEVNDEPLRQEEEENNENEAADDDENEV
PNMFDDSAPFDEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7007.t4 | Coils | Coil | Coil | 110 | 152 | - |
| 4 | g7007.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 193 | - |
| 6 | g7007.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 115 | - |
| 5 | g7007.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 193 | - |
| 1 | g7007.t4 | PANTHER | PTHR12366 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE | 6 | 180 | 7.4E-16 |
| 2 | g7007.t4 | PANTHER | PTHR12366:SF29 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE | 6 | 180 | 7.4E-16 |
| 8 | g7007.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 10 | g7007.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
| 9 | g7007.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 35 | 193 | - |
| 3 | g7007.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042264 | peptidyl-aspartic acid hydroxylation | BP |
| GO:0004597 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
