General information for g7052.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Uridine phosphorylase 1.
Parent gene
- The parent gene g7052 is located on chr_2: 20868468..20871007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7052 | g7052.t2 | TTS | g7052.t2 | 20867324 | 20867324 |
| chr_2 | g7052 | g7052.t2 | isoform | g7052.t2 | 20867448 | 20868080 |
| chr_2 | g7052 | g7052.t2 | exon | g7052.t2.exon1 | 20867448 | 20867743 |
| chr_2 | g7052 | g7052.t2 | cds | g7052.t2.CDS1 | 20867448 | 20867743 |
| chr_2 | g7052 | g7052.t2 | exon | g7052.t2.exon2 | 20867803 | 20867944 |
| chr_2 | g7052 | g7052.t2 | cds | g7052.t2.CDS2 | 20867803 | 20867881 |
| chr_2 | g7052 | g7052.t2 | exon | g7052.t2.exon3 | 20868001 | 20868080 |
| chr_2 | g7052 | g7052.t2 | TSS | g7052.t2 | NA | NA |
Sequences
>g7052.t2 Gene=g7052 Length=518
GTGGGATTGGTATTGATGGAGGTACTGTAGTCGTTTCTAATGAAGGAGTTGATGGCTGCT
TAAGAAATACCTACGAAGTTGCGGTTCTTGGAAAAAATATATCTCGCCCAGCAAAACTTG
ATCAGAAATTAGCTCGTGAACTGATGTCACTAGCAGATCTTGAGCGCGATGGATATGAAA
CAGTTTGCGGCAAAACAATGTGTGCCAATGACTTCTATGAAGGACAAGGACGTCTGGATG
GAGCATTTTGTGATTTTACAGAAAAAGATAAAATGAATTTTTTGCACAAATGTAAAGACT
TTGGTGTTGTAAACATTGAAATGGAAGCGACAATTTTTGGTGCATTGACATATCATGCAG
GAATCAAAGCTGCAATCGTTTGTGTCGCACTGCTAAACCGTTTAAAAGGAGATCAAGTAA
GTACACCAAAAGATATAATGTTGGAATGGCAAAAACGACCTCAAGTGCTTGTTTCACGAT
ATATCAAAAAGAAATTACGTTTAAGTCATGGACATTAG
>g7052.t2 Gene=g7052 Length=124
MSLADLERDGYETVCGKTMCANDFYEGQGRLDGAFCDFTEKDKMNFLHKCKDFGVVNIEM
EATIFGALTYHAGIKAAIVCVALLNRLKGDQVSTPKDIMLEWQKRPQVLVSRYIKKKLRL
SHGH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7052.t2 | Gene3D | G3DSA:3.40.50.1580 | - | 2 | 121 | 0 |
| 2 | g7052.t2 | PANTHER | PTHR43691:SF3 | FI09636P-RELATED | 6 | 118 | 0 |
| 3 | g7052.t2 | PANTHER | PTHR43691 | URIDINE PHOSPHORYLASE | 6 | 118 | 0 |
| 1 | g7052.t2 | Pfam | PF01048 | Phosphorylase superfamily | 6 | 114 | 0 |
| 4 | g7052.t2 | SUPERFAMILY | SSF53167 | Purine and uridine phosphorylases | 7 | 116 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009116 | nucleoside metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed