Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Uridine phosphorylase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7052 g7052.t22 isoform g7052.t22 20868468 20871007
chr_2 g7052 g7052.t22 exon g7052.t22.exon1 20868468 20868547
chr_2 g7052 g7052.t22 cds g7052.t22.CDS1 20868468 20868547
chr_2 g7052 g7052.t22 exon g7052.t22.exon2 20868646 20868691
chr_2 g7052 g7052.t22 cds g7052.t22.CDS2 20868646 20868691
chr_2 g7052 g7052.t22 exon g7052.t22.exon3 20869164 20869301
chr_2 g7052 g7052.t22 cds g7052.t22.CDS3 20869164 20869301
chr_2 g7052 g7052.t22 exon g7052.t22.exon4 20869378 20869501
chr_2 g7052 g7052.t22 cds g7052.t22.CDS4 20869378 20869501
chr_2 g7052 g7052.t22 exon g7052.t22.exon5 20869555 20869779
chr_2 g7052 g7052.t22 cds g7052.t22.CDS5 20869555 20869739
chr_2 g7052 g7052.t22 exon g7052.t22.exon6 20870837 20871007
chr_2 g7052 g7052.t22 TSS g7052.t22 20871007 20871007
chr_2 g7052 g7052.t22 TTS g7052.t22 NA NA

Sequences

>g7052.t22 Gene=g7052 Length=784
AGTTTTGTGTTTAGTCTCGTGTTGTTCAGTAAGAAGTTTAAAAAGAAAAAGAGTGAGAAG
AAAAAATACTTTTTAAAAAAATCTCAAGAAAATTTCAAGTTTTTTGTTTGGTGTCCAAAA
AGAAAAAGGTTAAATACCTGTTACGTAAAAGAAAAAGAACAGAAAGAGGAAATCATTTGA
ATAAAATATTTGCGTGGAATTTTAAAGAAAAATGTCAGTCATTCAATCGATCGATATGGA
TGATATCTATAAAGAGTTGAAAAACAATACAATTAAAATTGATGCAAATGGAAATGATAT
TTCATCTGAAGAAGATTCTGGTTCAGCAACAAGTGATTCAATTGAAGAGAATGAAAATGA
AAGCATAGAGCAATTAAAATTGCGAAGTCTTACACGATATAATGATGGAAGTGTTAAATT
AAGAAATCCATATATTGAGCAATTGGAATCAGATTATCTCTATCATTTATCATTGGGAAG
TGCTTCACATGACTTGCATGAAATGTTTGGTGATGTTAAATTTGTCTGTATGGGAGGAAC
ATCTTCTAGAATGAAAGACTTTGCATATTATGTGATGAAAGAAATTGGTCATAAACTTCC
AGCAGGCACACAATTACAAGACATAAGTGAGCTTTCTGGCCGTTATTCAATGTATAAGGT
TGGCCCGGTTCTTTCGGTGTCTCATGGCATGGGAACTCCGTCGATTGGGATTTTACTTCA
TGAGATTATAAAGCTGATGTACCACGCAAAATGTAAAGATCCAACTTTCTTCAGAATCGG
AACA

>g7052.t22 Gene=g7052 Length=191
MSVIQSIDMDDIYKELKNNTIKIDANGNDISSEEDSGSATSDSIEENENESIEQLKLRSL
TRYNDGSVKLRNPYIEQLESDYLYHLSLGSASHDLHEMFGDVKFVCMGGTSSRMKDFAYY
VMKEIGHKLPAGTQLQDISELSGRYSMYKVGPVLSVSHGMGTPSIGILLHEIIKLMYHAK
CKDPTFFRIGT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7052.t22 Coils Coil Coil 191 191 -
6 g7052.t22 Gene3D G3DSA:3.40.50.1580 - 54 191 8.9E-44
4 g7052.t22 MobiDBLite mobidb-lite consensus disorder prediction 27 45 -
5 g7052.t22 MobiDBLite mobidb-lite consensus disorder prediction 27 50 -
1 g7052.t22 PANTHER PTHR43691:SF3 FI09636P-RELATED 61 191 4.9E-54
2 g7052.t22 PANTHER PTHR43691 URIDINE PHOSPHORYLASE 61 191 4.9E-54
3 g7052.t22 SUPERFAMILY SSF53167 Purine and uridine phosphorylases 84 191 1.2E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009116 nucleoside metabolic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed