General information for g7052.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Uridine phosphorylase 1.
Parent gene
- The parent gene g7052 is located on chr_2: 20868468..20871007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7052 | g7052.t3 | TTS | g7052.t3 | 20867324 | 20867324 |
| chr_2 | g7052 | g7052.t3 | isoform | g7052.t3 | 20867448 | 20868547 |
| chr_2 | g7052 | g7052.t3 | exon | g7052.t3.exon1 | 20867448 | 20867743 |
| chr_2 | g7052 | g7052.t3 | cds | g7052.t3.CDS1 | 20867448 | 20867743 |
| chr_2 | g7052 | g7052.t3 | exon | g7052.t3.exon2 | 20867803 | 20867944 |
| chr_2 | g7052 | g7052.t3 | cds | g7052.t3.CDS2 | 20867803 | 20867944 |
| chr_2 | g7052 | g7052.t3 | exon | g7052.t3.exon3 | 20868001 | 20868080 |
| chr_2 | g7052 | g7052.t3 | cds | g7052.t3.CDS3 | 20868001 | 20868080 |
| chr_2 | g7052 | g7052.t3 | exon | g7052.t3.exon4 | 20868464 | 20868547 |
| chr_2 | g7052 | g7052.t3 | cds | g7052.t3.CDS4 | 20868464 | 20868515 |
| chr_2 | g7052 | g7052.t3 | TSS | g7052.t3 | NA | NA |
Sequences
>g7052.t3 Gene=g7052 Length=602
TTGGGATTTTACTTCATGAGATTATAAAGCTGATGTACCACGCAAAATGTAAAGATCCAA
CTTTCTTCAGAATCGGAACATGTGGTGGGATTGGTATTGATGGAGGTACTGTAGTCGTTT
CTAATGAAGGAGTTGATGGCTGCTTAAGAAATACCTACGAAGTTGCGGTTCTTGGAAAAA
ATATATCTCGCCCAGCAAAACTTGATCAGAAATTAGCTCGTGAACTGATGTCACTAGCAG
ATCTTGAGCGCGATGGATATGAAACAGTTTGCGGCAAAACAATGTGTGCCAATGACTTCT
ATGAAGGACAAGGACGTCTGGATGGAGCATTTTGTGATTTTACAGAAAAAGATAAAATGA
ATTTTTTGCACAAATGTAAAGACTTTGGTGTTGTAAACATTGAAATGGAAGCGACAATTT
TTGGTGCATTGACATATCATGCAGGAATCAAAGCTGCAATCGTTTGTGTCGCACTGCTAA
ACCGTTTAAAAGGAGATCAAGTAAGTACACCAAAAGATATAATGTTGGAATGGCAAAAAC
GACCTCAAGTGCTTGTTTCACGATATATCAAAAAGAAATTACGTTTAAGTCATGGACATT
AG
>g7052.t3 Gene=g7052 Length=189
MYHAKCKDPTFFRIGTCGGIGIDGGTVVVSNEGVDGCLRNTYEVAVLGKNISRPAKLDQK
LARELMSLADLERDGYETVCGKTMCANDFYEGQGRLDGAFCDFTEKDKMNFLHKCKDFGV
VNIEMEATIFGALTYHAGIKAAIVCVALLNRLKGDQVSTPKDIMLEWQKRPQVLVSRYIK
KKLRLSHGH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7052.t3 | Gene3D | G3DSA:3.40.50.1580 | - | 1 | 187 | 0 |
| 2 | g7052.t3 | PANTHER | PTHR43691:SF3 | FI09636P-RELATED | 1 | 183 | 0 |
| 3 | g7052.t3 | PANTHER | PTHR43691 | URIDINE PHOSPHORYLASE | 1 | 183 | 0 |
| 1 | g7052.t3 | Pfam | PF01048 | Phosphorylase superfamily | 9 | 179 | 0 |
| 4 | g7052.t3 | SUPERFAMILY | SSF53167 | Purine and uridine phosphorylases | 5 | 180 | 0 |
| 6 | g7052.t3 | TIGRFAM | TIGR01719 | euk_UDPppase: uridine phosphorylase | 1 | 183 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004850 | uridine phosphorylase activity | MF |
| GO:0009116 | nucleoside metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0005737 | cytoplasm | CC |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed