Gene loci information

Transcript annotation

  • This transcript has been annotated as Uridine phosphorylase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7052 g7052.t5 TTS g7052.t5 20867324 20867324
chr_2 g7052 g7052.t5 isoform g7052.t5 20867448 20869187
chr_2 g7052 g7052.t5 exon g7052.t5.exon1 20867448 20867743
chr_2 g7052 g7052.t5 cds g7052.t5.CDS1 20867448 20867743
chr_2 g7052 g7052.t5 exon g7052.t5.exon2 20867803 20867944
chr_2 g7052 g7052.t5 cds g7052.t5.CDS2 20867803 20867944
chr_2 g7052 g7052.t5 exon g7052.t5.exon3 20868001 20868080
chr_2 g7052 g7052.t5 cds g7052.t5.CDS3 20868001 20868080
chr_2 g7052 g7052.t5 exon g7052.t5.exon4 20868464 20868547
chr_2 g7052 g7052.t5 cds g7052.t5.CDS4 20868464 20868547
chr_2 g7052 g7052.t5 exon g7052.t5.exon5 20868646 20868691
chr_2 g7052 g7052.t5 cds g7052.t5.CDS5 20868646 20868691
chr_2 g7052 g7052.t5 exon g7052.t5.exon6 20869164 20869187
chr_2 g7052 g7052.t5 cds g7052.t5.CDS6 20869164 20869172
chr_2 g7052 g7052.t5 TSS g7052.t5 NA NA

Sequences

>g7052.t5 Gene=g7052 Length=672
TCTGGCCGTTATTCAATGTATAAGGTTGGCCCGGTTCTTTCGGTGTCTCATGGCATGGGA
ACTCCGTCGATTGGGATTTTACTTCATGAGATTATAAAGCTGATGTACCACGCAAAATGT
AAAGATCCAACTTTCTTCAGAATCGGAACATGTGGTGGGATTGGTATTGATGGAGGTACT
GTAGTCGTTTCTAATGAAGGAGTTGATGGCTGCTTAAGAAATACCTACGAAGTTGCGGTT
CTTGGAAAAAATATATCTCGCCCAGCAAAACTTGATCAGAAATTAGCTCGTGAACTGATG
TCACTAGCAGATCTTGAGCGCGATGGATATGAAACAGTTTGCGGCAAAACAATGTGTGCC
AATGACTTCTATGAAGGACAAGGACGTCTGGATGGAGCATTTTGTGATTTTACAGAAAAA
GATAAAATGAATTTTTTGCACAAATGTAAAGACTTTGGTGTTGTAAACATTGAAATGGAA
GCGACAATTTTTGGTGCATTGACATATCATGCAGGAATCAAAGCTGCAATCGTTTGTGTC
GCACTGCTAAACCGTTTAAAAGGAGATCAAGTAAGTACACCAAAAGATATAATGTTGGAA
TGGCAAAAACGACCTCAAGTGCTTGTTTCACGATATATCAAAAAGAAATTACGTTTAAGT
CATGGACATTAG

>g7052.t5 Gene=g7052 Length=218
MYKVGPVLSVSHGMGTPSIGILLHEIIKLMYHAKCKDPTFFRIGTCGGIGIDGGTVVVSN
EGVDGCLRNTYEVAVLGKNISRPAKLDQKLARELMSLADLERDGYETVCGKTMCANDFYE
GQGRLDGAFCDFTEKDKMNFLHKCKDFGVVNIEMEATIFGALTYHAGIKAAIVCVALLNR
LKGDQVSTPKDIMLEWQKRPQVLVSRYIKKKLRLSHGH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7052.t5 CDD cd17763 UP_hUPP-like 1 210 0
5 g7052.t5 Gene3D G3DSA:3.40.50.1580 - 1 216 0
2 g7052.t5 PANTHER PTHR43691:SF3 FI09636P-RELATED 1 212 0
3 g7052.t5 PANTHER PTHR43691 URIDINE PHOSPHORYLASE 1 212 0
1 g7052.t5 Pfam PF01048 Phosphorylase superfamily 2 208 0
4 g7052.t5 SUPERFAMILY SSF53167 Purine and uridine phosphorylases 1 209 0
6 g7052.t5 TIGRFAM TIGR01719 euk_UDPppase: uridine phosphorylase 1 212 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004850 uridine phosphorylase activity MF
GO:0009116 nucleoside metabolic process BP
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed