General information for g7074.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Nucleolar GTP-binding protein 1.
Parent gene
- The parent gene g7074 is located on chr_2: 21005322..21006270 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7074 | g7074.t4 | TTS | g7074.t4 | 21004088 | 21004088 |
| chr_2 | g7074 | g7074.t4 | isoform | g7074.t4 | 21004180 | 21004994 |
| chr_2 | g7074 | g7074.t4 | exon | g7074.t4.exon1 | 21004180 | 21004335 |
| chr_2 | g7074 | g7074.t4 | cds | g7074.t4.CDS1 | 21004180 | 21004335 |
| chr_2 | g7074 | g7074.t4 | exon | g7074.t4.exon2 | 21004396 | 21004994 |
| chr_2 | g7074 | g7074.t4 | cds | g7074.t4.CDS2 | 21004396 | 21004812 |
| chr_2 | g7074 | g7074.t4 | TSS | g7074.t4 | NA | NA |
Sequences
>g7074.t4 Gene=g7074 Length=755
AGAAGGATATTGAGGAAGAAGAAGGTGATGATTACATCTTAGATTTAAAGAAACATTATG
TGACAATACCAGAAGAAGAACGTTACGATATCATACCCGAGTTTTTGGATGGACACAACA
TTGCAGATTATATCGATCCAGATATTTTTGAGAAACTTGAAGAGCTTGAACGTGAAGAAG
GCATGCGTTTGGAAAATGGATTTTATGATCCACCGAAGCTCAATATTGATGAAACTCTTC
AAGAAATTCGTGATATGGCTAGGCAAATTCGCACAAAAAGATTTATCCTTCGAGACAATA
AAAAATTGGCACCGAAAGCTGATAAGCCTAAGATTCCTCGACACAAATTACCTCACATTC
GTGAACGTAAAGTTGAAAATTTGAAGAACACTATGGAAGAACTCGGTGTTGATATGAGTG
GAAAAGATGATGCAAACTTTGTTAAGAGTCAAATGAGCTTACGTCGTGGAATTGCACCTG
CAATAGGTGGCAGTATTCAAAAGAAGAAGGACAAAGAATCATCAGCAATTGTCAAATCAA
CCGGTCAACCACTCAAACGAAAAGCACCTAAACATGAACTTGGACTCTCAAATGTAATTA
CAAAAAAGAAGGCACAAGTAATGGCCAAACACGATATTGCAAAAAAGCTGAAGAAAATGT
GTTTGAAGGGAGAAGCAGATCGTTTTATTGGAGACTTAAAACCCAAACATTTATTCTCTG
GAAAGCGTGGATCAGGCAAAACAGATCGTCGATAA
>g7074.t4 Gene=g7074 Length=190
MRLENGFYDPPKLNIDETLQEIRDMARQIRTKRFILRDNKKLAPKADKPKIPRHKLPHIR
ERKVENLKNTMEELGVDMSGKDDANFVKSQMSLRRGIAPAIGGSIQKKKDKESSAIVKST
GQPLKRKAPKHELGLSNVITKKKAQVMAKHDIAKKLKKMCLKGEADRFIGDLKPKHLFSG
KRGSGKTDRR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g7074.t4 | PANTHER | PTHR45759 | NUCLEOLAR GTP-BINDING PROTEIN 1 | 3 | 190 | 0 |
| g7074.t4 | PANTHER | PTHR45759:SF1 | NUCLEOLAR GTP-BINDING PROTEIN 1 | 3 | 190 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
