General information for g7080.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7080 is located on chr_2: 21071562..21073193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7080 | g7080.t2 | isoform | g7080.t2 | 21068728 | 21069932 |
| chr_2 | g7080 | g7080.t2 | exon | g7080.t2.exon1 | 21068728 | 21069932 |
| chr_2 | g7080 | g7080.t2 | cds | g7080.t2.CDS1 | 21069182 | 21069367 |
| chr_2 | g7080 | g7080.t2 | TSS | g7080.t2 | 21070744 | 21070744 |
| chr_2 | g7080 | g7080.t2 | TTS | g7080.t2 | NA | NA |
Sequences
>g7080.t2 Gene=g7080 Length=1205
TGATATTGCATATTCAGTTAGTGCTAGTGGTGGTGGTGGAATAGTGAAAAGTCGTGATTT
TGTTAATCTTCGTTGTTGGAAGTTGATCAAAGATTCTCGCATAGTTGAAAACTACAATAT
CAATTCATCTTTAGATAAACTTTCTATCAAGACTCATTCATCTGATGGTGATAACGAAAA
CTCAGAAGATGACGAAGAAAAGAAAGATATTACAGAAGTTAAGAAAAGTAAAAAGAAAGT
CGTGAAATCATCCCATGAGAAACCTTTAAAGAAATCAGCAAGTGATAATGAGATAAACGA
GAGTAATGCTGATAATAATAGTTTTGAAACAAAAGAACAATTGAGTAAAAGTCTTGGAGC
TAATACAGTAACAACTGATGTTAGGTGCACGAGTGATGATGATGATGAATCCTTTTCAGA
TGCCCAAGACATAAAAACTGAACCAACAATTGTAAAGAATCTACAAAACTATGTGTTCGT
TAGTGCTGCAATCAGCATAGAATATCCACTATTTCCACCCAATTCAAAATACATTCGTGG
AGACAATATTATAAGTTGTTGGGCTATGCGACACATTCCAAATGAATCCGATTCTTGTAT
ATTTGAATGGCTATTGTGCATTGATTTGAAAGGAAGTTTGCCGAAGTATATTTTAAATAC
TGCCTTTGTCTCATTAATGACTGATTATATGATACATCTTCGAAATAGGGTTCAAGAACT
TAATGAAGAAAACAACACTCAGAGTGCCTAAAATTATTTACCAATTATTTATTATTTATC
TTTGCATTACTGCTTGATAGTATGTAATTTTACATTTATCACTTTTACTGATTTGTTTAA
AAATTTTATATTCCACTTTTTTGCTCTTATTAGTTGTAATAGTCCAAGATAATAAACTTA
TCACTTAATTTACATAAAACATTATATTATTTTTCGACGAATATTGTAGATTCTTGATAA
TTTTCTAGAGTTTAATAAAAAGAATATACTTAGAAACATATGTGTCTTTAGTAATAAAAC
TCATTCATTCAATTTTTCAGCATTTGTCTTTTGCCGTAAAATTAGTGTATTTTATTTTCT
CAACTTTTTTTTTATTTTTTCATGCTTTGCAAAAATTAATTTTTATAGAATTTAAATTAA
TGAAAATTTCGCCATAGTCTTCATCGATGAATGATTAATTATATGAACATGTGTTTCTGT
CTCAT
>g7080.t2 Gene=g7080 Length=61
MRHIPNESDSCIFEWLLCIDLKGSLPKYILNTAFVSLMTDYMIHLRNRVQELNEENNTQS
A
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g7080.t2 | Coils | Coil | Coil | 42 | 61 | - |
| 5 | g7080.t2 | Gene3D | G3DSA:3.30.530.20 | - | 1 | 55 | 1.1E-14 |
| 2 | g7080.t2 | PANTHER | PTHR46121:SF4 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE | 1 | 56 | 1.1E-13 |
| 3 | g7080.t2 | PANTHER | PTHR46121 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE | 1 | 56 | 1.1E-13 |
| 1 | g7080.t2 | Pfam | PF01852 | START domain | 6 | 54 | 1.2E-4 |
| 7 | g7080.t2 | ProSiteProfiles | PS50848 | START domain profile. | 1 | 54 | 10.735 |
| 4 | g7080.t2 | SUPERFAMILY | SSF55961 | Bet v1-like | 4 | 53 | 8.88E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008289 | lipid binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
