General information for g7101.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative NAD kinase 2, mitochondrial.
Parent gene
- The parent gene g7101 is located on chr_2: 21189768..21192179 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7101 | g7101.t8 | TTS | g7101.t8 | 21188505 | 21188505 |
| chr_2 | g7101 | g7101.t8 | isoform | g7101.t8 | 21189366 | 21190565 |
| chr_2 | g7101 | g7101.t8 | exon | g7101.t8.exon1 | 21189366 | 21189378 |
| chr_2 | g7101 | g7101.t8 | cds | g7101.t8.CDS1 | 21189367 | 21189378 |
| chr_2 | g7101 | g7101.t8 | exon | g7101.t8.exon2 | 21189770 | 21190565 |
| chr_2 | g7101 | g7101.t8 | cds | g7101.t8.CDS2 | 21189770 | 21190312 |
| chr_2 | g7101 | g7101.t8 | TSS | g7101.t8 | NA | NA |
Sequences
>g7101.t8 Gene=g7101 Length=809
TGCAAAAAAGACAGCAACACATTTTTTAAAGGCAAAGTACCAACCAACTTATCACATTGC
CAAACATCAGTCGACGTATGTGAATAATCATTGGTTCCATTCTCATGCTAAGAATAATAA
ATTGCGCATCAAGAAAGTTCTTATAGTGACAAAATTAACTCGATATGAATTTGAGAAAAT
TCGACACGCTGAATTAAATGATGCTGAACTTGAAGAAAAGATTAAATATCGTGGCACAGA
TTATGATGCACTCATGTATTATCATAATCTTCATAAGGCAGTTGAACGTAAAGTAGTTGA
CAGTTTTAGTCAAATGGGCGTAGAAGTCAAGGTTGTTAATCGTTTGACAATCAACAAAGA
GTTACTTCAATGGACTGATTTAATTGTGCCAGTTGGTGGAGATGGAACTTTTCTTCTTGC
CGCTTCACGTGCAACTCCCTTCTTTATAGAAAATTCCGTCCCTATCGTAGGTTTTAATTC
TGATCCACAACGCTCGGAAGGCAGACTTATGTTGCCAAAACAGTATACGAGTGATGTAAA
TGATGCTGTAAAGAAAATAATTAAAGGAGAATTTGAATGGATGCATAGATCACGTATCAG
AATAACTCTATTGAAATTTAATGGTGAAACACCAATACCTATAGATCTTCATGAATTTAA
TCCTGCGCCTGTAGAGCACAAAGAACTTTTTGTGTCTGAACCTTCGTTACTGGATCAAAT
TAATGGAGGAGCGTATTACCCAGGAAGAAAGAATAAAGCAACAAAACGCATATTGCCGTA
CTTGGCGCTTAATGAGGTTTTCATTGGAG
>g7101.t8 Gene=g7101 Length=185
MYYHNLHKAVERKVVDSFSQMGVEVKVVNRLTINKELLQWTDLIVPVGGDGTFLLAASRA
TPFFIENSVPIVGFNSDPQRSEGRLMLPKQYTSDVNDAVKKIIKGEFEWMHRSRIRITLL
KFNGETPIPIDLHEFNPAPVEHKELFVSEPSLLDQINGGAYYPGRKNKATKRILPYLALN
EVFIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7101.t8 | Gene3D | G3DSA:3.40.50.10330 | - | 2 | 126 | 0e+00 |
| 2 | g7101.t8 | PANTHER | PTHR13158 | - | 3 | 185 | 0e+00 |
| 3 | g7101.t8 | PANTHER | PTHR13158:SF5 | NAD KINASE 2, MITOCHONDRIAL | 3 | 185 | 0e+00 |
| 1 | g7101.t8 | Pfam | PF01513 | ATP-NAD kinase | 28 | 131 | 9e-07 |
| 4 | g7101.t8 | SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 19 | 184 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003951 | NAD+ kinase activity | MF |
| GO:0006741 | NADP biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
