Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative NAD kinase 2, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7101 g7101.t9 isoform g7101.t9 21189768 21192179
chr_2 g7101 g7101.t9 exon g7101.t9.exon1 21189768 21190578
chr_2 g7101 g7101.t9 cds g7101.t9.CDS1 21189770 21190578
chr_2 g7101 g7101.t9 exon g7101.t9.exon2 21192140 21192179
chr_2 g7101 g7101.t9 cds g7101.t9.CDS2 21192140 21192179
chr_2 g7101 g7101.t9 TSS g7101.t9 21192404 21192404
chr_2 g7101 g7101.t9 TTS g7101.t9 NA NA

Sequences

>g7101.t9 Gene=g7101 Length=851
ATGCAAAGATCTAATAAGTTAGCAACAGTTGTCCTTGCAGGTTTTCGAAAGCATGCAAAA
AAGACAGCAACACATTTTTTAAAGGCAAAGTACCAACCAACTTATCACATTGCCAAACAT
CAGTCGACGTATGTGAATAATCATTGGTTCCATTCTCATGCTAAGAATAATAAATTGCGC
ATCAAGAAAGTTCTTATAGTGACAAAATTAACTCGATATGAATTTGAGAAAATTCGACAC
GCTGAATTAAATGATGCTGAACTTGAAGAAAAGATTAAATATCGTGGCACAGATTATGAT
GCACTCATGTATTATCATAATCTTCATAAGGCAGTTGAACGTAAAGTAGTTGACAGTTTT
AGTCAAATGGGCGTAGAAGTCAAGGTTGTTAATCGTTTGACAATCAACAAAGAGTTACTT
CAATGGACTGATTTAATTGTGCCAGTTGGTGGAGATGGAACTTTTCTTCTTGCCGCTTCA
CGTGCAACTCCCTTCTTTATAGAAAATTCCGTCCCTATCGTAGGTTTTAATTCTGATCCA
CAACGCTCGGAAGGCAGACTTATGTTGCCAAAACAGTATACGAGTGATGTAAATGATGCT
GTAAAGAAAATAATTAAAGGAGAATTTGAATGGATGCATAGATCACGTATCAGAATAACT
CTATTGAAATTTAATGGTGAAACACCAATACCTATAGATCTTCATGAATTTAATCCTGCG
CCTGTAGAGCACAAAGAACTTTTTGTGTCTGAACCTTCGTTACTGGATCAAATTAATGGA
GGAGCGTATTACCCAGGAAGAAAGAATAAAGCAACAAAACGCATATTGCCGTACTTGGCG
CTTAATGAGGT

>g7101.t9 Gene=g7101 Length=283
MQRSNKLATVVLAGFRKHAKKTATHFLKAKYQPTYHIAKHQSTYVNNHWFHSHAKNNKLR
IKKVLIVTKLTRYEFEKIRHAELNDAELEEKIKYRGTDYDALMYYHNLHKAVERKVVDSF
SQMGVEVKVVNRLTINKELLQWTDLIVPVGGDGTFLLAASRATPFFIENSVPIVGFNSDP
QRSEGRLMLPKQYTSDVNDAVKKIIKGEFEWMHRSRIRITLLKFNGETPIPIDLHEFNPA
PVEHKELFVSEPSLLDQINGGAYYPGRKNKATKRILPYLALNE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g7101.t9 Gene3D G3DSA:3.40.50.10330 - 59 230 1.1E-9
2 g7101.t9 PANTHER PTHR13158 - 27 283 3.9E-65
3 g7101.t9 PANTHER PTHR13158:SF5 NAD KINASE 2, MITOCHONDRIAL 27 283 3.9E-65
1 g7101.t9 Pfam PF01513 ATP-NAD kinase 110 233 1.9E-6
7 g7101.t9 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
8 g7101.t9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 6 -
9 g7101.t9 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 7 15 -
10 g7101.t9 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 19 -
6 g7101.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 283 -
4 g7101.t9 SUPERFAMILY SSF111331 NAD kinase/diacylglycerol kinase-like 97 283 1.83E-14

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003951 NAD+ kinase activity MF
GO:0006741 NADP biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values