General information for g7197.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7197 is located on chr_2: 22052328..22053499 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7197 | g7197.t3 | TTS | g7197.t3 | 22048930 | 22048930 |
| chr_2 | g7197 | g7197.t3 | isoform | g7197.t3 | 22049269 | 22050237 |
| chr_2 | g7197 | g7197.t3 | exon | g7197.t3.exon1 | 22049269 | 22049577 |
| chr_2 | g7197 | g7197.t3 | cds | g7197.t3.CDS1 | 22049269 | 22049577 |
| chr_2 | g7197 | g7197.t3 | exon | g7197.t3.exon2 | 22049639 | 22049790 |
| chr_2 | g7197 | g7197.t3 | cds | g7197.t3.CDS2 | 22049639 | 22049790 |
| chr_2 | g7197 | g7197.t3 | exon | g7197.t3.exon3 | 22049846 | 22049929 |
| chr_2 | g7197 | g7197.t3 | cds | g7197.t3.CDS3 | 22049846 | 22049929 |
| chr_2 | g7197 | g7197.t3 | exon | g7197.t3.exon4 | 22050029 | 22050237 |
| chr_2 | g7197 | g7197.t3 | cds | g7197.t3.CDS4 | 22050029 | 22050197 |
| chr_2 | g7197 | g7197.t3 | TSS | g7197.t3 | NA | NA |
Sequences
>g7197.t3 Gene=g7197 Length=754
TTCAACGCCAATACCTATTCAGACACGTCAATCACGAGTTATGCATTTTGAGGACAAGAA
TAAAGCCTTCAGGCAAGTTGTCAACAAGGATCAATTAGCAAAATTAAAAGAGCAACGTCT
TCCACCAATTGAACATGTTCAAATGATAAATGGTGTTAGAAGAAGAATTTATCAAAATAT
GCCACTCCGAAAAAATCTCGAAATGAAAAATGCTAAGAGAATGAAAATTACTGCTGTTCA
TTACGATGGGGACACAACTAGACTTGAAGGAACCGGTCACCAAAGTTACAAAGGTAACGG
AAAAGTGATATTGGATAAAAATGAGTACATGCATTGGAAACAAGCGGATTGGGTTCCTGA
TCATGGCATGGAGAGATTTTTCCATATGGATTCTACAGGCACTCTTACTGTAAAAGATCA
TGGATTGTTTTTGATTTACGCGCAAGTATATTACAGCGACAATCACGATTTAAATGGCTA
TGAAATTGTTCATAACAATCATGTAAAATATCAGTGCACAACAATGACACATGGTTCTCA
TGGCGAACCCAAAACAAACAGTTGCTACACCAGTGGCCTCATTCATTTGAGAAATGGTGA
TAAAATTCGTTTGCGTGATGTCGGTAATCATCGATATGTATTGATGCAGCCAAATAAAAG
CTTTTTCGGTTTAATTAAAATCAATCTATTGCCATCAGTTGCATCAGATAGCAGTAGCAG
TACAGATATCGAACAATACGAATCAATTAAATAA
>g7197.t3 Gene=g7197 Length=237
MHFEDKNKAFRQVVNKDQLAKLKEQRLPPIEHVQMINGVRRRIYQNMPLRKNLEMKNAKR
MKITAVHYDGDTTRLEGTGHQSYKGNGKVILDKNEYMHWKQADWVPDHGMERFFHMDSTG
TLTVKDHGLFLIYAQVYYSDNHDLNGYEIVHNNHVKYQCTTMTHGSHGEPKTNSCYTSGL
IHLRNGDKIRLRDVGNHRYVLMQPNKSFFGLIKINLLPSVASDSSSSTDIEQYESIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7197.t3 | Gene3D | G3DSA:2.60.120.40 | - | 80 | 219 | 0.00 |
| 2 | g7197.t3 | PANTHER | PTHR15151 | PROTEIN EIGER | 49 | 215 | 0.00 |
| 3 | g7197.t3 | PANTHER | PTHR15151:SF24 | PROTEIN EIGER | 49 | 215 | 0.00 |
| 1 | g7197.t3 | Pfam | PF00229 | TNF(Tumour Necrosis Factor) family | 118 | 214 | 0.00 |
| 6 | g7197.t3 | ProSiteProfiles | PS50049 | TNF family profile. | 65 | 214 | 13.74 |
| 4 | g7197.t3 | SUPERFAMILY | SSF49842 | TNF-like | 97 | 216 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005164 | tumor necrosis factor receptor binding | MF |
| GO:0005515 | protein binding | MF |
| GO:0006955 | immune response | BP |
KEGG
Orthology
- This transcript has been annotated with K16678 (eiger)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
