General information for g7197.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutathione S-transferase C-terminal domain-containing protein-like protein.
Parent gene
- The parent gene g7197 is located on chr_2: 22052328..22053499 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7197 | g7197.t6 | isoform | g7197.t6 | 22050254 | 22051329 |
| chr_2 | g7197 | g7197.t6 | exon | g7197.t6.exon1 | 22050254 | 22050815 |
| chr_2 | g7197 | g7197.t6 | cds | g7197.t6.CDS1 | 22050381 | 22050815 |
| chr_2 | g7197 | g7197.t6 | exon | g7197.t6.exon2 | 22050896 | 22051329 |
| chr_2 | g7197 | g7197.t6 | cds | g7197.t6.CDS2 | 22050896 | 22051261 |
| chr_2 | g7197 | g7197.t6 | TSS | g7197.t6 | NA | NA |
| chr_2 | g7197 | g7197.t6 | TTS | g7197.t6 | NA | NA |
Sequences
>g7197.t6 Gene=g7197 Length=996
GACAATTACGTGGACAAAAGGCTAAAATAAAAGCTCAGAAAAAAATTGTTGACCAAAAAG
AAATCGATATGATATTGTCAAAACTAAAATCAATAGATATAAAGAGCGAGCCCGGCAATG
TACATGAACAAAGTTCTTTGAGCGATTCATTCATTGAAGAATTGCTTACACGTGGTGAAC
TTCCTCCCGATAGATTTGAGCGAAAAAAATTTCAATTAAAAAGTTTAACAGTTGAAGTTT
TAAAAATAGCAAAAGATAAAGACGTGATTGTCGATTTCTGTTCTGGCACTGGTCATCTTG
GTTTATTAATTGCAAAGCTATTGCCAAATTGCAACATTATTATTTTGGAAAATAAAGAAG
AATCAATCAAGAGGGCAAAGCAAAAGGCTAAAAGTTTAGGCTTGTCGAATGTATCATTCT
ATCAATGCAATTTGGAGTACTTCTATGAGCAATTTACGATTGGTGTAGGATTGCATGCAT
GCGGCATTGCAACAGACTTATGGATGAATAAGTGTTATAAAACGGGTGCAAGCTTCGTCT
GCAGTCCATGCTGTTATGGAAAGATTCAAGATTTAGGAAATCTTAATTTACCTCAAAGTA
AAATTTTTAAACAAATTCTAAGTACACATGAATTTATCAGCATTTCTCATTGTTCGGATC
AATCTCATGATGAAAAAAATGTTAAACACATAAATTTAGAAAAAGCCCAACAAGGATTTT
GGTGTATGGACATAATAGATACAGATCGATCTTTAAGAGCTAAAGAATTAGGCTATAAAG
TTAGACTAACTCGTCTTGTACCGGAAGATTGCACGCCAAAAAATCGCCTTTTAATTGGAT
TAAGTCCAAATTATAAAATTTTATATTAAATATAAATAAAATAAAATACCTACCTAGCAA
ATGATTAAATTATAGTTTTTACACCTACTTTATATGAATATAGTTTAATTTATTTAAAAA
AATTTTGTTGACATTGCGATTGTTCTTTTTTTGTGC
>g7197.t6 Gene=g7197 Length=266
MILSKLKSIDIKSEPGNVHEQSSLSDSFIEELLTRGELPPDRFERKKFQLKSLTVEVLKI
AKDKDVIVDFCSGTGHLGLLIAKLLPNCNIIILENKEESIKRAKQKAKSLGLSNVSFYQC
NLEYFYEQFTIGVGLHACGIATDLWMNKCYKTGASFVCSPCCYGKIQDLGNLNLPQSKIF
KQILSTHEFISISHCSDQSHDEKNVKHINLEKAQQGFWCMDIIDTDRSLRAKELGYKVRL
TRLVPEDCTPKNRLLIGLSPNYKILY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7197.t6 | CDD | cd02440 | AdoMet_MTases | 67 | 125 | 4.96622E-5 |
| 6 | g7197.t6 | Coils | Coil | Coil | 93 | 113 | - |
| 5 | g7197.t6 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 36 | 224 | 7.1E-15 |
| 2 | g7197.t6 | PANTHER | PTHR13369:SF0 | GLUTATHIONE S-TRANSFERASE C-TERMINAL DOMAIN-CONTAINING PROTEIN | 34 | 258 | 2.2E-82 |
| 3 | g7197.t6 | PANTHER | PTHR13369 | UNCHARACTERIZED | 34 | 258 | 2.2E-82 |
| 1 | g7197.t6 | Pfam | PF13847 | Methyltransferase domain | 63 | 222 | 9.1E-13 |
| 4 | g7197.t6 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 40 | 127 | 4.03E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
