General information for g7197.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase C-terminal domain-containing protein-like protein.
Parent gene
- The parent gene g7197 is located on chr_2: 22052328..22053499 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7197 | g7197.t7 | isoform | g7197.t7 | 22050254 | 22052741 |
| chr_2 | g7197 | g7197.t7 | exon | g7197.t7.exon1 | 22050254 | 22050815 |
| chr_2 | g7197 | g7197.t7 | cds | g7197.t7.CDS1 | 22050381 | 22050746 |
| chr_2 | g7197 | g7197.t7 | exon | g7197.t7.exon2 | 22050896 | 22051019 |
| chr_2 | g7197 | g7197.t7 | exon | g7197.t7.exon3 | 22052238 | 22052619 |
| chr_2 | g7197 | g7197.t7 | exon | g7197.t7.exon4 | 22052686 | 22052741 |
| chr_2 | g7197 | g7197.t7 | TSS | g7197.t7 | 22052855 | 22052855 |
| chr_2 | g7197 | g7197.t7 | TTS | g7197.t7 | NA | NA |
Sequences
>g7197.t7 Gene=g7197 Length=1124
ATGATTGAGCATTTTTCGAAAAAGCGTATGATTTTTGGAATTTTCGTGTTAATTTCTTTG
ACTATTGTTGTGCTACTAATAGAATCTGAGTGGGATCTGATTACACCAAAGCCTCAATCT
TTTGTAGTTGAAAACAATTCAACGTGTTATCTGCGAGAGGAATATCAAATTGTAAAACAT
TGCGAACCGTGCAGTCAGTTTGAGATTAAAGTAGCTCAAACAAATAAGCAAGGAGTTTGT
TTTCATACTCACAACAAAGAAGTACTCAAGTGCCAATCAGGAGAAATTGTCATAAAGTCT
TGTGATAAAGTTGCATTTCTTGAGAGAAAAAATTATTACATTTTTATGGTATTTGCCTTC
ATTATTTCGCTCTTTTCAACAACTGTTGTATACACGAGACAAAAGTTTTTAGATAGGAAT
TTTTTTAAGTCAATTAATTGCAAAGCTATTGCCAAATTGCAACATTATTATTTTGGAAAA
TAAAGAAGAATCAATCAAGAGGGCAAAGCAAAAGGCTAAAAGTTTAGGCTTGTCGAATGT
ATCATTCTATCAATGCAATTTGGAGTACTTCTATGAGCAATTTACGATTGGTGTAGGATT
GCATGCATGCGGCATTGCAACAGACTTATGGATGAATAAGTGTTATAAAACGGGTGCAAG
CTTCGTCTGCAGTCCATGCTGTTATGGAAAGATTCAAGATTTAGGAAATCTTAATTTACC
TCAAAGTAAAATTTTTAAACAAATTCTAAGTACACATGAATTTATCAGCATTTCTCATTG
TTCGGATCAATCTCATGATGAAAAAAATGTTAAACACATAAATTTAGAAAAAGCCCAACA
AGGATTTTGGTGTATGGACATAATAGATACAGATCGATCTTTAAGAGCTAAAGAATTAGG
CTATAAAGTTAGACTAACTCGTCTTGTACCGGAAGATTGCACGCCAAAAAATCGCCTTTT
AATTGGATTAAGTCCAAATTATAAAATTTTATATTAAATATAAATAAAATAAAATACCTA
CCTAGCAAATGATTAAATTATAGTTTTTACACCTACTTTATATGAATATAGTTTAATTTA
TTTAAAAAAATTTTGTTGACATTGCGATTGTTCTTTTTTTGTGC
>g7197.t7 Gene=g7197 Length=121
MNKCYKTGASFVCSPCCYGKIQDLGNLNLPQSKIFKQILSTHEFISISHCSDQSHDEKNV
KHINLEKAQQGFWCMDIIDTDRSLRAKELGYKVRLTRLVPEDCTPKNRLLIGLSPNYKIL
Y
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7197.t7 | PANTHER | PTHR13369 | UNCHARACTERIZED | 1 | 113 | 0.0e+00 |
| 1 | g7197.t7 | Pfam | PF05206 | Methyltransferase TRM13 | 52 | 111 | 8.6e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008168 | methyltransferase activity | MF |
| GO:0008033 | tRNA processing | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
