General information for g7197.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glutathione S-transferase C-terminal domain-containing protein-like protein.
Parent gene
- The parent gene g7197 is located on chr_2: 22052328..22053499 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7197 | g7197.t8 | isoform | g7197.t8 | 22050254 | 22052741 |
| chr_2 | g7197 | g7197.t8 | exon | g7197.t8.exon1 | 22050254 | 22050815 |
| chr_2 | g7197 | g7197.t8 | cds | g7197.t8.CDS1 | 22050381 | 22050815 |
| chr_2 | g7197 | g7197.t8 | exon | g7197.t8.exon2 | 22050896 | 22052619 |
| chr_2 | g7197 | g7197.t8 | cds | g7197.t8.CDS2 | 22050896 | 22052215 |
| chr_2 | g7197 | g7197.t8 | exon | g7197.t8.exon3 | 22052686 | 22052741 |
| chr_2 | g7197 | g7197.t8 | TSS | g7197.t8 | 22052855 | 22052855 |
| chr_2 | g7197 | g7197.t8 | TTS | g7197.t8 | NA | NA |
Sequences
>g7197.t8 Gene=g7197 Length=2342
ATGATTGAGCATTTTTCGAAAAAGCGTATGATTTTTGGAATTTTCGTGTTAATTTCTTTG
ACTATTGTTGTGCTACTAATAGAATCTGAGTGGGATCTGATTACACCAAAGCCTCAATCT
TTTGTAGTTGAAAACAATTCAACGTGTTATCTGCGAGAGGAATATCAAATTGTAAAACAT
TGCGAACCGTGCAGTCAGTTTGAGATTAAAGTAGCTCAAACAAATAAGCAAGGAGTTTGT
TTTCATACTCACAACAAAGAAGTACTCAAGTGCCAATCAGGAGAAATTGTCATAAAGTCT
TGTGATAAAGTTGCATTTCTTGAGAGAAAAAATTATTACATTTTTATGGTATTTGCCTTC
ATTATTTCGCTCTTTTCAACAACTGTTGTATACACGAGACAAAAGTTTTTAGATAGGAAT
TTTTTTAAGTCAATTAATGGATAGAAATTAATAAATAAAGATGAATCAATTAATTCTGGG
CTGTAAAAAACGATCAAATAAATCTTGTGAGTTAACTATCGAGTCATTCATCATATTAAC
GTTATGGAAACTTTTGAAAGGAGAAGAAAAAATTGACATTCAAATATATGAGGAATATGA
AGCAATCAACACAACAACAATAAGCGTGAATTGTAATGAATTAGGCAAAAATATCGAATT
TGTTCCAGTAATAGCAGTGAATGAGAAGATTAAATTGCCAATGCTCAAAATCGACAATGA
TAATTTTAAAATAATAGGACTCTGTTCAATTCTAAGAGCGATTTGTAGAATTATACAAAC
GTCAAAAGAAGAAGACAAATTAGCGACACAACTTTTGGGTTATAAAGAAAACTGTCTCAT
GGCAACTTCAGAAGTCAGCTTATGGGTTAATTTCTGTGAACGTGAAATGATTTCTTGTGC
TGAAAAATTATTTCAGAAGAAAAATGTCCAAGAAAAAATTGAATTTCCAATAGAAATACT
TAAACTTGAATTAGAGTTCAACAATCCTGTAAGGAGTCATAATGTTTTTCAAATAGTTCG
TAAAACAAAAAATAATAAGTCTCTTCAAAGTCATTGCGCATTGAATATAGATTTGGAGCA
TAAATATTGTCATGGAAATGAAGCAAATTTATCAGACTGTATTCTCTATGTGATTTTCAA
ATTGATTTTTATGACAGTGGAGGATAATGTTTTTGAAAATAATATACCGCTTGTTATGTC
ATGGTTTCATAATATAGAAAATGAAATGAAATATTTGAAGGAGATTATTACTAATCTATT
GATCACGAACATAAAAATGAAAGTACAGTTCAAGAAAGAACTTCCGATTGTTGAACCTAA
TGGTAAATACTTTAGTCTCTTCAAACGACAATTACGTGGACAAAAGGCTAAAATAAAAGC
TCAGAAAAAAATTGTTGACCAAAAAGAAATCGATATGATATTGTCAAAACTAAAATCAAT
AGATATAAAGAGCGAGCCCGGCAATGTACATGAACAAAGTTCTTTGAGCGATTCATTCAT
TGAAGAATTGCTTACACGTGGTGAACTTCCTCCCGATAGATTTGAGCGAAAAAAATTTCA
ATTAAAAAGTTTAACAGTTGAAGTTTTAAAAATAGCAAAAGATAAAGACGTGATTGTCGA
TTTCTGTTCTGGCACTGGTCATCTTGGTTTATTAATTGCAAAGCTATTGCCAAATTGCAA
CATTATTATTTTGGAAAATAAAGAAGAATCAATCAAGAGGGCAAAGCAAAAGGCTAAAAG
TTTAGGCTTGTCGAATGTATCATTCTATCAATGCAATTTGGAGTACTTCTATGAGCAATT
TACGATTGGTGTAGGATTGCATGCATGCGGCATTGCAACAGACTTATGGATGAATAAGTG
TTATAAAACGGGTGCAAGCTTCGTCTGCAGTCCATGCTGTTATGGAAAGATTCAAGATTT
AGGAAATCTTAATTTACCTCAAAGTAAAATTTTTAAACAAATTCTAAGTACACATGAATT
TATCAGCATTTCTCATTGTTCGGATCAATCTCATGATGAAAAAAATGTTAAACACATAAA
TTTAGAAAAAGCCCAACAAGGATTTTGGTGTATGGACATAATAGATACAGATCGATCTTT
AAGAGCTAAAGAATTAGGCTATAAAGTTAGACTAACTCGTCTTGTACCGGAAGATTGCAC
GCCAAAAAATCGCCTTTTAATTGGATTAAGTCCAAATTATAAAATTTTATATTAAATATA
AATAAAATAAAATACCTACCTAGCAAATGATTAAATTATAGTTTTTACACCTACTTTATA
TGAATATAGTTTAATTTATTTAAAAAAATTTTGTTGACATTGCGATTGTTCTTTTTTTGT
GC
>g7197.t8 Gene=g7197 Length=584
MNQLILGCKKRSNKSCELTIESFIILTLWKLLKGEEKIDIQIYEEYEAINTTTISVNCNE
LGKNIEFVPVIAVNEKIKLPMLKIDNDNFKIIGLCSILRAICRIIQTSKEEDKLATQLLG
YKENCLMATSEVSLWVNFCEREMISCAEKLFQKKNVQEKIEFPIEILKLELEFNNPVRSH
NVFQIVRKTKNNKSLQSHCALNIDLEHKYCHGNEANLSDCILYVIFKLIFMTVEDNVFEN
NIPLVMSWFHNIENEMKYLKEIITNLLITNIKMKVQFKKELPIVEPNGKYFSLFKRQLRG
QKAKIKAQKKIVDQKEIDMILSKLKSIDIKSEPGNVHEQSSLSDSFIEELLTRGELPPDR
FERKKFQLKSLTVEVLKIAKDKDVIVDFCSGTGHLGLLIAKLLPNCNIIILENKEESIKR
AKQKAKSLGLSNVSFYQCNLEYFYEQFTIGVGLHACGIATDLWMNKCYKTGASFVCSPCC
YGKIQDLGNLNLPQSKIFKQILSTHEFISISHCSDQSHDEKNVKHINLEKAQQGFWCMDI
IDTDRSLRAKELGYKVRLTRLVPEDCTPKNRLLIGLSPNYKILY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g7197.t8 | CDD | cd02440 | AdoMet_MTases | 385 | 443 | 1.23966E-4 |
| 6 | g7197.t8 | Coils | Coil | Coil | 411 | 431 | - |
| 5 | g7197.t8 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 354 | 533 | 4.3E-14 |
| 2 | g7197.t8 | PANTHER | PTHR13369:SF0 | GLUTATHIONE S-TRANSFERASE C-TERMINAL DOMAIN-CONTAINING PROTEIN | 76 | 576 | 1.5E-104 |
| 3 | g7197.t8 | PANTHER | PTHR13369 | UNCHARACTERIZED | 76 | 576 | 1.5E-104 |
| 1 | g7197.t8 | Pfam | PF13847 | Methyltransferase domain | 382 | 513 | 5.2E-12 |
| 4 | g7197.t8 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 358 | 444 | 1.81E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
