General information for g7223.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative F-actin-capping protein subunit alpha.
Parent gene
- The parent gene g7223 is located on chr_2: 22196001..22196697 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7223 | g7223.t3 | TTS | g7223.t3 | 22194481 | 22194481 |
| chr_2 | g7223 | g7223.t3 | isoform | g7223.t3 | 22194503 | 22195684 |
| chr_2 | g7223 | g7223.t3 | exon | g7223.t3.exon1 | 22194503 | 22195586 |
| chr_2 | g7223 | g7223.t3 | cds | g7223.t3.CDS1 | 22195311 | 22195451 |
| chr_2 | g7223 | g7223.t3 | exon | g7223.t3.exon2 | 22195640 | 22195684 |
| chr_2 | g7223 | g7223.t3 | TSS | g7223.t3 | NA | NA |
Sequences
>g7223.t3 Gene=g7223 Length=1129
TCTGGAAGTGGTGCGGCTGAGATTAAAGGTGTACTCAAAGTTCAAGTTCATTACTACGAA
GATGGTAATGTTCAATTAGTATCATCGAAAGAATGTCGTGAATCTGTAATTGTTACGAAT
GAAATTCAAACTGCAAAAGAAATCATTAAAGTAGTTGAAGACAGTGAACAAGACTATCAA
ATGGCGATATCAGAGAATTATCAAACAATGTCTGACACGACATTCAAAGCTCTTCGCCGC
CAATTGCCTGTGACACGCACGAAAATCGATTGGGCCAAAATTGTATCTTATTCTATTGGT
AAGGAGCTAAAAACGCAATAATAATGAATTCCATATGTGCTCGTCGTCATATGTTTGCTA
TATGTTTATTATTATTCCTCAATTATTTTTATGATTCTAAATAATTTTTTCGAACCATAC
TTTTTCGAATGCTCTTTTTGTTCAAAAAAAGTTTTATCGAAGAAGTTTATTTTAATTATT
TCATACATGTATCTAATCTAATTATAGTAATTGTATTATCAGTCTGGGAAATTTTATTCT
CTATATTATTATTCACAAATTTTATACAAGAAAAAAGTTACATTGCCTTTTAAAAAATAA
TTCTTATACGAGCATACTTTTTTCATATTCTTTGTGTCAATTCTAGATCAAATGATATTT
CTACTACAATTAAATTCGATTTTAATTTCTTGATAATTATGAGCTTTTAATTTTTCTAAA
CCTTTTCCTGGCTCGTTTTCTTAATTCCTAAATACATCAACCAAACACAATGAAAATTTT
GTTTGATTCTTCCTCATCCTTATTTAATTTTGACAAGCTAAAAAATCATTAAATCAATGA
AAAAATAAACTGCGAGCATCTGAGCATATTCTGCATTTGCAAAAAATCATTAAAATGAAA
ATAAATTTAGATAAAAAATTCGATAATTGAAGAGCAAAAGTTGAAAATTAAGTATTAAGC
AAACTCTTCTTTTACCAACACTTCGATTACGAACATCAAAACGAAAAAAGAATTAAAATA
AGTGAAACTGTTTTTTAAATGATGAATAAGAACTTGCATTATTATAAATAAAAAAAATCT
TTGCAAAGACATTAATCACAAAAATAAACTAAAATAATGAAAATAAAAT
>g7223.t3 Gene=g7223 Length=46
MAISENYQTMSDTTFKALRRQLPVTRTKIDWAKIVSYSIGKELKTQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7223.t3 | PANTHER | PTHR10653 | F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA | 2 | 44 | 1.7E-18 |
| 3 | g7223.t3 | PANTHER | PTHR10653:SF2 | F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA-2 | 2 | 44 | 1.7E-18 |
| 1 | g7223.t3 | Pfam | PF01267 | F-actin capping protein alpha subunit | 2 | 44 | 9.2E-18 |
| 5 | g7223.t3 | ProSitePatterns | PS00749 | F-actin capping protein alpha subunit signature 2. | 16 | 26 | - |
| 4 | g7223.t3 | SUPERFAMILY | SSF90096 | Subunits of heterodimeric actin filament capping protein Capz | 2 | 41 | 2.09E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051016 | barbed-end actin filament capping | BP |
| GO:0008290 | F-actin capping protein complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
