General information for g7229.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g7229 is located on chr_2: 22246555..22247713 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7229 | g7229.t1 | TSS | g7229.t1 | 22246518 | 22246518 |
| chr_2 | g7229 | g7229.t1 | isoform | g7229.t1 | 22246555 | 22247713 |
| chr_2 | g7229 | g7229.t1 | exon | g7229.t1.exon1 | 22246555 | 22247363 |
| chr_2 | g7229 | g7229.t1 | cds | g7229.t1.CDS1 | 22246555 | 22247363 |
| chr_2 | g7229 | g7229.t1 | exon | g7229.t1.exon2 | 22247419 | 22247713 |
| chr_2 | g7229 | g7229.t1 | cds | g7229.t1.CDS2 | 22247419 | 22247713 |
| chr_2 | g7229 | g7229.t1 | TTS | g7229.t1 | 22248149 | 22248149 |
Sequences
>g7229.t1 Gene=g7229 Length=1104
ATGAAAAGTGCAATTTTAGGAATAATATTGAGTTTAATTAGCTCAAATTTAGCTTGTACA
ATTACTAGACTAGATGGTTTTCTTGCACCATCAACTTTTTGTGCTGGTGATTTAGTTTTT
GAAGACAATTTTGACTTTGTTGATACTTCAAAATGGCTTTTTGATAATACATTGGGTGGT
GGTGGAAATTGGGAATTTCAATGGTATCCAGGATATCACAATCTCAATTTTCAAATAAGA
AATGGAGTTGCACATTTTATTCCAACATTGACATCTGATTATTTCGGAAGTGAAGCTTTC
CTCTCAAGTGGACGTATAACCATACCACCAGATCAATGTACTCAAGCTGATTGGTATGGA
TGTGACAGAACAGGAACACCTGATAATATTTTAAATCCAACAAGAAGTGCAAGAATTGAT
TCAAGAAGATCATTTGGATTCCGTTACGGAACTGTCGAATTCCGTGCAAAGATGCCACTT
GGAGATTGGTTATGGCCGGCAATATGGTTCATGCCGATGCACAACGTTTATGGTGGTTGG
CCTCGATCAGGTGAAATAGATTTGATGGAAATGCGTGGCAACTATAATCTCTGGTCAGGT
TCTACACATGTTGGAGTTGAGCAAGTCGGACATACAATGCACTTTGGTCCACAATGGGAT
CATAATGGATGGCCTACTGCTCATTTTACAAGAAATCGTACACCTGGATTTGATTTAGAT
TTTCATCTGTATAAACTTGTATGGACTGATCAGCATATACAATTTTATATTGACAATCAA
CTTACAGGAACAGTCTCAGCTGGCACTGGATTTTGGGATAGAGGTGGTTTTCATAATTCT
GGTCATGCCAATCCTTGGGCTGGAGCCTCTCCTATGGCACCATTTGATCAAGAATTTTAT
ATCATTATGAACTTGGCTGTTGGCGGAACCAATTATTTCTCTGATTATTTTGTCAATCTT
CCAAATCCAAAACCATGGCTTAATACAAGTCCTCGTGCAGCAGCAGACTTTTGGGAGCAT
CGTCATTGGTGGCTTCCTACTTGGAATATGGGAACAGAACAATCACACATGCAAGTCGAC
TATGTTAGAGTATGGGCGATTTAA
>g7229.t1 Gene=g7229 Length=367
MKSAILGIILSLISSNLACTITRLDGFLAPSTFCAGDLVFEDNFDFVDTSKWLFDNTLGG
GGNWEFQWYPGYHNLNFQIRNGVAHFIPTLTSDYFGSEAFLSSGRITIPPDQCTQADWYG
CDRTGTPDNILNPTRSARIDSRRSFGFRYGTVEFRAKMPLGDWLWPAIWFMPMHNVYGGW
PRSGEIDLMEMRGNYNLWSGSTHVGVEQVGHTMHFGPQWDHNGWPTAHFTRNRTPGFDLD
FHLYKLVWTDQHIQFYIDNQLTGTVSAGTGFWDRGGFHNSGHANPWAGASPMAPFDQEFY
IIMNLAVGGTNYFSDYFVNLPNPKPWLNTSPRAAADFWEHRHWWLPTWNMGTEQSHMQVD
YVRVWAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g7229.t1 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 32 | 366 | 8.2E-85 |
| 4 | g7229.t1 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 32 | 366 | 8.2E-85 |
| 2 | g7229.t1 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 134 | 266 | 7.4E-17 |
| 9 | g7229.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 10 | g7229.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 11 | g7229.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 12 | g7229.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 8 | g7229.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 367 | - |
| 7 | g7229.t1 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 22 | 367 | 25.051 |
| 5 | g7229.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 29 | 366 | 3.17E-60 |
| 6 | g7229.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 1 | g7229.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed